... | ... |
@@ -244,7 +244,7 @@ |
244 | 244 |
|
245 | 245 |
/* The size of `fpos_t', as computed by sizeof. */ |
246 | 246 |
#ifndef CLUSTAL_OMEGA_SIZEOF_FPOS_T |
247 |
-#define CLUSTAL_OMEGA_SIZEOF_FPOS_T 12 |
|
247 |
+#define CLUSTAL_OMEGA_SIZEOF_FPOS_T 16 |
|
248 | 248 |
#endif |
249 | 249 |
|
250 | 250 |
/* The size of `unsigned int', as computed by sizeof. */ |
... | ... |
@@ -254,7 +254,7 @@ |
254 | 254 |
|
255 | 255 |
/* The size of `unsigned long', as computed by sizeof. */ |
256 | 256 |
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG |
257 |
-#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 4 |
|
257 |
+#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 8 |
|
258 | 258 |
#endif |
259 | 259 |
|
260 | 260 |
/* The size of `unsigned long long', as computed by sizeof. */ |
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@102514 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -244,7 +244,7 @@ |
244 | 244 |
|
245 | 245 |
/* The size of `fpos_t', as computed by sizeof. */ |
246 | 246 |
#ifndef CLUSTAL_OMEGA_SIZEOF_FPOS_T |
247 |
-#define CLUSTAL_OMEGA_SIZEOF_FPOS_T 16 |
|
247 |
+#define CLUSTAL_OMEGA_SIZEOF_FPOS_T 12 |
|
248 | 248 |
#endif |
249 | 249 |
|
250 | 250 |
/* The size of `unsigned int', as computed by sizeof. */ |
... | ... |
@@ -254,7 +254,7 @@ |
254 | 254 |
|
255 | 255 |
/* The size of `unsigned long', as computed by sizeof. */ |
256 | 256 |
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG |
257 |
-#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 8 |
|
257 |
+#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 4 |
|
258 | 258 |
#endif |
259 | 259 |
|
260 | 260 |
/* The size of `unsigned long long', as computed by sizeof. */ |
msa
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@102253 bc3139a8-67e5-0310-9ffc-ced21a209358
1 | 1 |
new file mode 100644 |
... | ... |
@@ -0,0 +1,349 @@ |
1 |
+#ifndef _SRC_CLUSTAL_OMEGA_CONFIG_H |
|
2 |
+#define _SRC_CLUSTAL_OMEGA_CONFIG_H 1 |
|
3 |
+ |
|
4 |
+/* src/clustal-omega-config.h. Generated automatically at end of configure. */ |
|
5 |
+/* src/config.h. Generated from config.h.in by configure. */ |
|
6 |
+/* src/config.h.in. Generated from configure.ac by autoheader. */ |
|
7 |
+ |
|
8 |
+/* Define if building universal (internal helper macro) */ |
|
9 |
+/* #undef AC_APPLE_UNIVERSAL_BUILD */ |
|
10 |
+ |
|
11 |
+/* Let all files know they are being used inside Clustal Omega */ |
|
12 |
+#ifndef CLUSTAL_OMEGA_CLUSTALO |
|
13 |
+#define CLUSTAL_OMEGA_CLUSTALO 1 |
|
14 |
+#endif |
|
15 |
+ |
|
16 |
+/* This is a CYGWIN system */ |
|
17 |
+/* #undef CYGWIN */ |
|
18 |
+ |
|
19 |
+/* This is a Darwin system */ |
|
20 |
+/* #undef DARWIN */ |
|
21 |
+ |
|
22 |
+/* Define to 1 if you have the <argtable2.h> header file. */ |
|
23 |
+/* #undef HAVE_ARGTABLE2_H */ |
|
24 |
+ |
|
25 |
+/* Define to 1 if you have the <assert.h> header file. */ |
|
26 |
+#ifndef CLUSTAL_OMEGA_HAVE_ASSERT_H |
|
27 |
+#define CLUSTAL_OMEGA_HAVE_ASSERT_H 1 |
|
28 |
+#endif |
|
29 |
+ |
|
30 |
+/* Define to 1 if you have the <ctype.h> header file. */ |
|
31 |
+#ifndef CLUSTAL_OMEGA_HAVE_CTYPE_H |
|
32 |
+#define CLUSTAL_OMEGA_HAVE_CTYPE_H 1 |
|
33 |
+#endif |
|
34 |
+ |
|
35 |
+/* Define to 1 if you have the <dlfcn.h> header file. */ |
|
36 |
+#ifndef CLUSTAL_OMEGA_HAVE_DLFCN_H |
|
37 |
+#define CLUSTAL_OMEGA_HAVE_DLFCN_H 1 |
|
38 |
+#endif |
|
39 |
+ |
|
40 |
+/* Define to 1 if you have the <float.h> header file. */ |
|
41 |
+#ifndef CLUSTAL_OMEGA_HAVE_FLOAT_H |
|
42 |
+#define CLUSTAL_OMEGA_HAVE_FLOAT_H 1 |
|
43 |
+#endif |
|
44 |
+ |
|
45 |
+/* Define to 1 if you have the `fseek64' function. */ |
|
46 |
+/* #undef HAVE_FSEEK64 */ |
|
47 |
+ |
|
48 |
+/* Define to 1 if you have the `fseeko' function. */ |
|
49 |
+#ifndef CLUSTAL_OMEGA_HAVE_FSEEKO |
|
50 |
+#define CLUSTAL_OMEGA_HAVE_FSEEKO 1 |
|
51 |
+#endif |
|
52 |
+ |
|
53 |
+/* Define to 1 if you have the `fseeko64' function. */ |
|
54 |
+#ifndef CLUSTAL_OMEGA_HAVE_FSEEKO64 |
|
55 |
+#define CLUSTAL_OMEGA_HAVE_FSEEKO64 1 |
|
56 |
+#endif |
|
57 |
+ |
|
58 |
+/* Define to 1 if you have the `ftell64' function. */ |
|
59 |
+/* #undef HAVE_FTELL64 */ |
|
60 |
+ |
|
61 |
+/* Define to 1 if you have the `ftello' function. */ |
|
62 |
+#ifndef CLUSTAL_OMEGA_HAVE_FTELLO |
|
63 |
+#define CLUSTAL_OMEGA_HAVE_FTELLO 1 |
|
64 |
+#endif |
|
65 |
+ |
|
66 |
+/* Define to 1 if you have the `ftello64' function. */ |
|
67 |
+#ifndef CLUSTAL_OMEGA_HAVE_FTELLO64 |
|
68 |
+#define CLUSTAL_OMEGA_HAVE_FTELLO64 1 |
|
69 |
+#endif |
|
70 |
+ |
|
71 |
+/* Define to 1 if you have the <inttypes.h> header file. */ |
|
72 |
+#ifndef CLUSTAL_OMEGA_HAVE_INTTYPES_H |
|
73 |
+#define CLUSTAL_OMEGA_HAVE_INTTYPES_H 1 |
|
74 |
+#endif |
|
75 |
+ |
|
76 |
+/* Define to 1 if you have the `argtable2' library (-largtable2). */ |
|
77 |
+/* #undef HAVE_LIBARGTABLE2 */ |
|
78 |
+ |
|
79 |
+/* Define to 1 if you have the `m' library (-lm). */ |
|
80 |
+#ifndef CLUSTAL_OMEGA_HAVE_LIBM |
|
81 |
+#define CLUSTAL_OMEGA_HAVE_LIBM 1 |
|
82 |
+#endif |
|
83 |
+ |
|
84 |
+/* Define to 1 if you have the <limits.h> header file. */ |
|
85 |
+#ifndef CLUSTAL_OMEGA_HAVE_LIMITS_H |
|
86 |
+#define CLUSTAL_OMEGA_HAVE_LIMITS_H 1 |
|
87 |
+#endif |
|
88 |
+ |
|
89 |
+/* Has log2() */ |
|
90 |
+#ifndef CLUSTAL_OMEGA_HAVE_LOG2 |
|
91 |
+#define CLUSTAL_OMEGA_HAVE_LOG2 1 |
|
92 |
+#endif |
|
93 |
+ |
|
94 |
+/* Define to 1 if you have the <math.h> header file. */ |
|
95 |
+#ifndef CLUSTAL_OMEGA_HAVE_MATH_H |
|
96 |
+#define CLUSTAL_OMEGA_HAVE_MATH_H 1 |
|
97 |
+#endif |
|
98 |
+ |
|
99 |
+/* Define to 1 if you have the <memory.h> header file. */ |
|
100 |
+#ifndef CLUSTAL_OMEGA_HAVE_MEMORY_H |
|
101 |
+#define CLUSTAL_OMEGA_HAVE_MEMORY_H 1 |
|
102 |
+#endif |
|
103 |
+ |
|
104 |
+/* Define to 1 if you have the `ntohl' function. */ |
|
105 |
+#ifndef CLUSTAL_OMEGA_HAVE_NTOHL |
|
106 |
+#define CLUSTAL_OMEGA_HAVE_NTOHL 1 |
|
107 |
+#endif |
|
108 |
+ |
|
109 |
+/* Define to 1 if you have the `ntohs' function. */ |
|
110 |
+#ifndef CLUSTAL_OMEGA_HAVE_NTOHS |
|
111 |
+#define CLUSTAL_OMEGA_HAVE_NTOHS 1 |
|
112 |
+#endif |
|
113 |
+ |
|
114 |
+/* Define to 1 if you have the `ntonl' function. */ |
|
115 |
+/* #undef HAVE_NTONL */ |
|
116 |
+ |
|
117 |
+/* Define to 1 if you have the `ntons' function. */ |
|
118 |
+/* #undef HAVE_NTONS */ |
|
119 |
+ |
|
120 |
+/* Defined if OpenMP should and can be used */ |
|
121 |
+#ifndef CLUSTAL_OMEGA_HAVE_OPENMP |
|
122 |
+#define CLUSTAL_OMEGA_HAVE_OPENMP 1 |
|
123 |
+#endif |
|
124 |
+ |
|
125 |
+/* Define to 1 if you have the <stdarg.h> header file. */ |
|
126 |
+#ifndef CLUSTAL_OMEGA_HAVE_STDARG_H |
|
127 |
+#define CLUSTAL_OMEGA_HAVE_STDARG_H 1 |
|
128 |
+#endif |
|
129 |
+ |
|
130 |
+/* Define to 1 if you have the <stdint.h> header file. */ |
|
131 |
+#ifndef CLUSTAL_OMEGA_HAVE_STDINT_H |
|
132 |
+#define CLUSTAL_OMEGA_HAVE_STDINT_H 1 |
|
133 |
+#endif |
|
134 |
+ |
|
135 |
+/* Define to 1 if you have the <stdio.h> header file. */ |
|
136 |
+#ifndef CLUSTAL_OMEGA_HAVE_STDIO_H |
|
137 |
+#define CLUSTAL_OMEGA_HAVE_STDIO_H 1 |
|
138 |
+#endif |
|
139 |
+ |
|
140 |
+/* Define to 1 if you have the <stdlib.h> header file. */ |
|
141 |
+#ifndef CLUSTAL_OMEGA_HAVE_STDLIB_H |
|
142 |
+#define CLUSTAL_OMEGA_HAVE_STDLIB_H 1 |
|
143 |
+#endif |
|
144 |
+ |
|
145 |
+/* Define to 1 if you have the <strings.h> header file. */ |
|
146 |
+#ifndef CLUSTAL_OMEGA_HAVE_STRINGS_H |
|
147 |
+#define CLUSTAL_OMEGA_HAVE_STRINGS_H 1 |
|
148 |
+#endif |
|
149 |
+ |
|
150 |
+/* Define to 1 if you have the <string.h> header file. */ |
|
151 |
+#ifndef CLUSTAL_OMEGA_HAVE_STRING_H |
|
152 |
+#define CLUSTAL_OMEGA_HAVE_STRING_H 1 |
|
153 |
+#endif |
|
154 |
+ |
|
155 |
+/* Define to 1 if you have the `stroul' function. */ |
|
156 |
+/* #undef HAVE_STROUL */ |
|
157 |
+ |
|
158 |
+/* Define to 1 if you have the `strtoull' function. */ |
|
159 |
+#ifndef CLUSTAL_OMEGA_HAVE_STRTOULL |
|
160 |
+#define CLUSTAL_OMEGA_HAVE_STRTOULL 1 |
|
161 |
+#endif |
|
162 |
+ |
|
163 |
+/* Define to 1 if you have the <sys/stat.h> header file. */ |
|
164 |
+#ifndef CLUSTAL_OMEGA_HAVE_SYS_STAT_H |
|
165 |
+#define CLUSTAL_OMEGA_HAVE_SYS_STAT_H 1 |
|
166 |
+#endif |
|
167 |
+ |
|
168 |
+/* Define to 1 if you have the <sys/types.h> header file. */ |
|
169 |
+#ifndef CLUSTAL_OMEGA_HAVE_SYS_TYPES_H |
|
170 |
+#define CLUSTAL_OMEGA_HAVE_SYS_TYPES_H 1 |
|
171 |
+#endif |
|
172 |
+ |
|
173 |
+/* Define to 1 if you have the <time.h> header file. */ |
|
174 |
+#ifndef CLUSTAL_OMEGA_HAVE_TIME_H |
|
175 |
+#define CLUSTAL_OMEGA_HAVE_TIME_H 1 |
|
176 |
+#endif |
|
177 |
+ |
|
178 |
+/* Define to 1 if you have the <unistd.h> header file. */ |
|
179 |
+#ifndef CLUSTAL_OMEGA_HAVE_UNISTD_H |
|
180 |
+#define CLUSTAL_OMEGA_HAVE_UNISTD_H 1 |
|
181 |
+#endif |
|
182 |
+ |
|
183 |
+/* This is a LINUX system */ |
|
184 |
+#ifndef CLUSTAL_OMEGA_LINUX |
|
185 |
+#define CLUSTAL_OMEGA_LINUX 1 |
|
186 |
+#endif |
|
187 |
+ |
|
188 |
+/* Define to the sub-directory in which libtool stores uninstalled libraries. |
|
189 |
+ */ |
|
190 |
+#ifndef CLUSTAL_OMEGA_LT_OBJDIR |
|
191 |
+#define CLUSTAL_OMEGA_LT_OBJDIR ".libs/" |
|
192 |
+#endif |
|
193 |
+ |
|
194 |
+/* This is a MinGW system */ |
|
195 |
+/* #undef MINGW */ |
|
196 |
+ |
|
197 |
+/* No-debug Mode */ |
|
198 |
+#ifndef CLUSTAL_OMEGA_NDEBUG |
|
199 |
+#define CLUSTAL_OMEGA_NDEBUG /**/ |
|
200 |
+#endif |
|
201 |
+ |
|
202 |
+/* Some strange OS */ |
|
203 |
+/* #undef OTHEROS */ |
|
204 |
+ |
|
205 |
+/* Name of package */ |
|
206 |
+#ifndef CLUSTAL_OMEGA_PACKAGE |
|
207 |
+#define CLUSTAL_OMEGA_PACKAGE "clustal-omega" |
|
208 |
+#endif |
|
209 |
+ |
|
210 |
+/* Define to the address where bug reports for this package should be sent. */ |
|
211 |
+#ifndef CLUSTAL_OMEGA_PACKAGE_BUGREPORT |
|
212 |
+#define CLUSTAL_OMEGA_PACKAGE_BUGREPORT "clustalw@ucd.ie" |
|
213 |
+#endif |
|
214 |
+ |
|
215 |
+/* The package code name */ |
|
216 |
+#ifndef CLUSTAL_OMEGA_PACKAGE_CODENAME |
|
217 |
+#define CLUSTAL_OMEGA_PACKAGE_CODENAME "AndreaGiacomo" |
|
218 |
+#endif |
|
219 |
+ |
|
220 |
+/* Define to the full name of this package. */ |
|
221 |
+#ifndef CLUSTAL_OMEGA_PACKAGE_NAME |
|
222 |
+#define CLUSTAL_OMEGA_PACKAGE_NAME "Clustal Omega" |
|
223 |
+#endif |
|
224 |
+ |
|
225 |
+/* Define to the full name and version of this package. */ |
|
226 |
+#ifndef CLUSTAL_OMEGA_PACKAGE_STRING |
|
227 |
+#define CLUSTAL_OMEGA_PACKAGE_STRING "Clustal Omega 1.2.0" |
|
228 |
+#endif |
|
229 |
+ |
|
230 |
+/* Define to the one symbol short name of this package. */ |
|
231 |
+#ifndef CLUSTAL_OMEGA_PACKAGE_TARNAME |
|
232 |
+#define CLUSTAL_OMEGA_PACKAGE_TARNAME "clustal-omega" |
|
233 |
+#endif |
|
234 |
+ |
|
235 |
+/* Define to the home page for this package. */ |
|
236 |
+#ifndef CLUSTAL_OMEGA_PACKAGE_URL |
|
237 |
+#define CLUSTAL_OMEGA_PACKAGE_URL "" |
|
238 |
+#endif |
|
239 |
+ |
|
240 |
+/* Define to the version of this package. */ |
|
241 |
+#ifndef CLUSTAL_OMEGA_PACKAGE_VERSION |
|
242 |
+#define CLUSTAL_OMEGA_PACKAGE_VERSION "1.2.0" |
|
243 |
+#endif |
|
244 |
+ |
|
245 |
+/* The size of `fpos_t', as computed by sizeof. */ |
|
246 |
+#ifndef CLUSTAL_OMEGA_SIZEOF_FPOS_T |
|
247 |
+#define CLUSTAL_OMEGA_SIZEOF_FPOS_T 16 |
|
248 |
+#endif |
|
249 |
+ |
|
250 |
+/* The size of `unsigned int', as computed by sizeof. */ |
|
251 |
+#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT |
|
252 |
+#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT 4 |
|
253 |
+#endif |
|
254 |
+ |
|
255 |
+/* The size of `unsigned long', as computed by sizeof. */ |
|
256 |
+#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG |
|
257 |
+#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 8 |
|
258 |
+#endif |
|
259 |
+ |
|
260 |
+/* The size of `unsigned long long', as computed by sizeof. */ |
|
261 |
+#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG |
|
262 |
+#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG 8 |
|
263 |
+#endif |
|
264 |
+ |
|
265 |
+/* The size of `unsigned short', as computed by sizeof. */ |
|
266 |
+#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT |
|
267 |
+#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT 2 |
|
268 |
+#endif |
|
269 |
+ |
|
270 |
+/* This is a Solaris system */ |
|
271 |
+/* #undef SOLARIS */ |
|
272 |
+ |
|
273 |
+/* This is a BSD system */ |
|
274 |
+/* #undef SOMEBSD */ |
|
275 |
+ |
|
276 |
+/* Define to 1 if you have the ANSI C header files. */ |
|
277 |
+#ifndef CLUSTAL_OMEGA_STDC_HEADERS |
|
278 |
+#define CLUSTAL_OMEGA_STDC_HEADERS 1 |
|
279 |
+#endif |
|
280 |
+ |
|
281 |
+/* Enable extensions on AIX 3, Interix. */ |
|
282 |
+#ifndef _ALL_SOURCE |
|
283 |
+# define _ALL_SOURCE 1 |
|
284 |
+#endif |
|
285 |
+/* Enable GNU extensions on systems that have them. */ |
|
286 |
+#ifndef _GNU_SOURCE |
|
287 |
+# define _GNU_SOURCE 1 |
|
288 |
+#endif |
|
289 |
+/* Enable threading extensions on Solaris. */ |
|
290 |
+#ifndef _POSIX_PTHREAD_SEMANTICS |
|
291 |
+# define _POSIX_PTHREAD_SEMANTICS 1 |
|
292 |
+#endif |
|
293 |
+/* Enable extensions on HP NonStop. */ |
|
294 |
+#ifndef _TANDEM_SOURCE |
|
295 |
+# define _TANDEM_SOURCE 1 |
|
296 |
+#endif |
|
297 |
+/* Enable general extensions on Solaris. */ |
|
298 |
+#ifndef __EXTENSIONS__ |
|
299 |
+# define __EXTENSIONS__ 1 |
|
300 |
+#endif |
|
301 |
+ |
|
302 |
+ |
|
303 |
+/* Version number of package */ |
|
304 |
+#ifndef CLUSTAL_OMEGA_VERSION |
|
305 |
+#define CLUSTAL_OMEGA_VERSION "1.2.0" |
|
306 |
+#endif |
|
307 |
+ |
|
308 |
+/* Define if using the dmalloc debugging malloc package */ |
|
309 |
+/* #undef WITH_DMALLOC */ |
|
310 |
+ |
|
311 |
+/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most |
|
312 |
+ significant byte first (like Motorola and SPARC, unlike Intel). */ |
|
313 |
+#if defined AC_APPLE_UNIVERSAL_BUILD |
|
314 |
+# if defined __BIG_ENDIAN__ |
|
315 |
+# define WORDS_BIGENDIAN 1 |
|
316 |
+# endif |
|
317 |
+#else |
|
318 |
+# ifndef WORDS_BIGENDIAN |
|
319 |
+/* # undef WORDS_BIGENDIAN */ |
|
320 |
+# endif |
|
321 |
+#endif |
|
322 |
+ |
|
323 |
+/* Define to 1 if on MINIX. */ |
|
324 |
+/* #undef _MINIX */ |
|
325 |
+ |
|
326 |
+/* Define to 2 if the system does not provide POSIX.1 features except with |
|
327 |
+ this defined. */ |
|
328 |
+/* #undef _POSIX_1_SOURCE */ |
|
329 |
+ |
|
330 |
+/* Define to 1 if you need to in order for `stat' and other things to work. */ |
|
331 |
+/* #undef _POSIX_SOURCE */ |
|
332 |
+ |
|
333 |
+/* Define to empty if `const' does not conform to ANSI C. */ |
|
334 |
+/* #undef const */ |
|
335 |
+ |
|
336 |
+/* Define to `__inline__' or `__inline' if that's what the C compiler |
|
337 |
+ calls it, or to nothing if 'inline' is not supported under any name. */ |
|
338 |
+#ifndef __cplusplus |
|
339 |
+/* #undef inline */ |
|
340 |
+#endif |
|
341 |
+ |
|
342 |
+/* Define to `long int' if <sys/types.h> does not define. */ |
|
343 |
+/* #undef off_t */ |
|
344 |
+ |
|
345 |
+/* Define to `unsigned int' if <sys/types.h> does not define. */ |
|
346 |
+/* #undef size_t */ |
|
347 |
+ |
|
348 |
+/* once: _SRC_CLUSTAL_OMEGA_CONFIG_H */ |
|
349 |
+#endif |