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+

+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,

+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.

+# This Makefile.in is free software; the Free Software Foundation

+# gives unlimited permission to copy and/or distribute it,

+# with or without modifications, as long as this notice is preserved.

+

+# This program is distributed in the hope that it will be useful,

+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without

+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A

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+top_srcdir = @top_srcdir@

+EXTRA_DIST = clustalo-api-test.c

+SUBDIRS = exceptions4c hhalign squid kmpp argtable2 clustal

+

+# the following is the clustalo convenience library which wraps all

+# the other noinst libraries

+lib_LTLIBRARIES = libclustalo.la

+libclustalo_la_SOURCES = clustal-omega.c

+libclustalo_la_LIBADD = exceptions4c/libexceptions4c.la \

+	clustal/libclustal.la \

+	hhalign/libhhalign.la \

+	squid/libsquid.la	\

+	kmpp/libkmpp.la \

+	argtable2/libargtable2.la

+

+libclustalo_la_LDFLAGS = -static

+library_includedir = $(includedir)/clustalo/

+library_include_HEADERS = clustal-omega-config.h clustal-omega.h

+clustalo_SOURCES = main.cpp \

+	mymain.c mymain.h

+

+clustalo_LDADD = libclustalo.la

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+	$(MAKE) $(AM_MAKEFLAGS) all-recursive

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+	        && { if test -f $@; then exit 0; else break; fi; }; \

+	      exit 1;; \

+	  esac; \

+	done; \

+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/Makefile'; \

+	cd $(top_srcdir) && \

+	  $(AUTOMAKE) --gnu  src/Makefile

+.PRECIOUS: Makefile

+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status

+	@case '$?' in \

+	  *config.status*) \

+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \

+	  *) \

+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \

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+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh

+

+config.h: stamp-h1

+	@if test ! -f $@; then \

+	  rm -f stamp-h1; \

+	  $(MAKE) $(AM_MAKEFLAGS) stamp-h1; \

+	else :; fi

+

+stamp-h1: $(srcdir)/config.h.in $(top_builddir)/config.status

+	@rm -f stamp-h1

+	cd $(top_builddir) && $(SHELL) ./config.status src/config.h

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+	cd $(top_srcdir) && $(AUTOHEADER)

+	rm -f stamp-h1

+	touch $@

+

+distclean-hdr:

+	-rm -f config.h stamp-h1

+install-libLTLIBRARIES: $(lib_LTLIBRARIES)

+	@$(NORMAL_INSTALL)

+	test -z "$(libdir)" || $(MKDIR_P) "$(DESTDIR)$(libdir)"

+	@list='$(lib_LTLIBRARIES)'; for p in $$list; do \

+	  if test -f $$p; then \

+	    f=$(am__strip_dir) \

+	    echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(libLTLIBRARIES_INSTALL) $(INSTALL_STRIP_FLAG) '$$p' '$(DESTDIR)$(libdir)/$$f'"; \

+	    $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(libLTLIBRARIES_INSTALL) $(INSTALL_STRIP_FLAG) "$$p" "$(DESTDIR)$(libdir)/$$f"; \

+	  else :; fi; \

+	done

+

+uninstall-libLTLIBRARIES:

+	@$(NORMAL_UNINSTALL)

+	@list='$(lib_LTLIBRARIES)'; for p in $$list; do \

+	  p=$(am__strip_dir) \

+	  echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$p'"; \

+	  $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$p"; \

+	done

+

+clean-libLTLIBRARIES:

+	-test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES)

+	@list='$(lib_LTLIBRARIES)'; for p in $$list; do \

+	  dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \

+	  test "$$dir" != "$$p" || dir=.; \

+	  echo "rm -f \"$${dir}/so_locations\""; \

+	  rm -f "$${dir}/so_locations"; \

+	done

+libclustalo.la: $(libclustalo_la_OBJECTS) $(libclustalo_la_DEPENDENCIES) 

+	$(libclustalo_la_LINK) -rpath $(libdir) $(libclustalo_la_OBJECTS) $(libclustalo_la_LIBADD) $(LIBS)

+install-binPROGRAMS: $(bin_PROGRAMS)

+	@$(NORMAL_INSTALL)

+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"

+	@list='$(bin_PROGRAMS)'; for p in $$list; do \

+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \

+	  if test -f $$p \

+	     || test -f $$p1 \

+	  ; then \

+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \

+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \

+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \

+	  else :; fi; \

+	done

+

+uninstall-binPROGRAMS:

+	@$(NORMAL_UNINSTALL)

+	@list='$(bin_PROGRAMS)'; for p in $$list; do \

+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \

+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \

+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \

+	done

+

+clean-binPROGRAMS:

+	@list='$(bin_PROGRAMS)'; for p in $$list; do \

+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \

+	  echo " rm -f $$p $$f"; \

+	  rm -f $$p $$f ; \

+	done

+clustalo$(EXEEXT): $(clustalo_OBJECTS) $(clustalo_DEPENDENCIES) 

+	@rm -f clustalo$(EXEEXT)

+	$(CXXLINK) $(clustalo_OBJECTS) $(clustalo_LDADD) $(LIBS)

+

+mostlyclean-compile:

+	-rm -f *.$(OBJEXT)

+

+distclean-compile:

+	-rm -f *.tab.c

+

+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/clustal-omega.Plo@am__quote@

+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/main.Po@am__quote@

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+.c.obj:

+@am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`

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+.c.lo:

+@am__fastdepCC_TRUE@	$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<

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+@am__fastdepCXX_TRUE@	$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<

+@am__fastdepCXX_TRUE@	mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po

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+@am__fastdepCXX_FALSE@	$(LTCXXCOMPILE) -c -o $@ $<

+

+mostlyclean-libtool:

+	-rm -f *.lo

+

+clean-libtool:

+	-rm -rf .libs _libs

+install-library_includeHEADERS: $(library_include_HEADERS)

+	@$(NORMAL_INSTALL)

+	test -z "$(library_includedir)" || $(MKDIR_P) "$(DESTDIR)$(library_includedir)"

+	@list='$(library_include_HEADERS)'; for p in $$list; do \

+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \

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+	  echo " $(library_includeHEADERS_INSTALL) '$$d$$p' '$(DESTDIR)$(library_includedir)/$$f'"; \

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+# This directory's subdirectories are mostly independent; you can cd

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+# To change the values of `make' variables: instead of editing Makefiles,

+# (1) if the variable is set in `config.status', edit `config.status'

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+	    *k*) failcom='fail=yes';; \

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+	target=`echo $@ | sed s/-recursive//`; \

+	list='$(SUBDIRS)'; for subdir in $$list; do \

+	  echo "Making $$target in $$subdir"; \

+	  if test "$$subdir" = "."; then \

+	    dot_seen=yes; \

+	    local_target="$$target-am"; \

+	  else \

+	    local_target="$$target"; \

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+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \

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+	done; \

+	if test "$$dot_seen" = "no"; then \

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