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+EXTRA_DIST = clustalo-api-test.c

+

+SUBDIRS = hhalign squid kmpp argtable2 clustal

+

+AM_LDFLAGS = @AM_LDFLAGS@

+AM_CXXFLAGS = -fPIC @AM_CXXFLAGS@ @OPENMP_CXXFLAGS@

+AM_CFLAGS = -fPIC @AM_CFLAGS@ @OPENMP_CFLAGS@

+

+

+# the following is the clustalo convenience library which wraps all

+# the other noinst libraries

+

+lib_LTLIBRARIES = libclustalo.la

+

+libclustalo_la_SOURCES = clustal-omega.c

+libclustalo_la_LIBADD = exceptions4c/libexceptions4c.la \

+	../../gc-7.2/libgc.la \

+	../../gc-7.2/libgccpp.la \

+	clustal/libclustal.la \

+	hhalign/libhhalign.la \

+	squid/libsquid.la	\

+	kmpp/libkmpp.la \

+    argtable2/libargtable2.la

+libclustalo_la_LDFLAGS = -static

+library_includedir=$(includedir)/clustalo/

+library_include_HEADERS = clustal-omega-config.h clustal-omega.h

+

+

+

+bin_PROGRAMS = clustalo

+

+clustalo_SOURCES =  main.cpp \

+	mymain.c mymain.h

+

+clustalo_LDADD = libclustalo.la

+clustalo_CFLAGS = -fPIC