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add package to the repository

msa


git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@102253 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 10/04/2015 00:12:33
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+EXTRA_DIST = clustalo-api-test.c
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+SUBDIRS = hhalign squid kmpp argtable2 clustal
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+
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+AM_LDFLAGS = @AM_LDFLAGS@
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+AM_CXXFLAGS = -fPIC @AM_CXXFLAGS@ @OPENMP_CXXFLAGS@
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+AM_CFLAGS = -fPIC @AM_CFLAGS@ @OPENMP_CFLAGS@
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+
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+
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+# the following is the clustalo convenience library which wraps all
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+# the other noinst libraries
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+lib_LTLIBRARIES = libclustalo.la
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+
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+libclustalo_la_SOURCES = clustal-omega.c
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+libclustalo_la_LIBADD = exceptions4c/libexceptions4c.la \
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+	../../gc-7.2/libgc.la \
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+	../../gc-7.2/libgccpp.la \
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+	clustal/libclustal.la \
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+	hhalign/libhhalign.la \
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+	squid/libsquid.la	\
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+	kmpp/libkmpp.la \
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+    argtable2/libargtable2.la
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+libclustalo_la_LDFLAGS = -static
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+library_includedir=$(includedir)/clustalo/
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+library_include_HEADERS = clustal-omega-config.h clustal-omega.h
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+
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+
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+bin_PROGRAMS = clustalo
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+
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+clustalo_SOURCES =  main.cpp \
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+	mymain.c mymain.h
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+
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+clustalo_LDADD = libclustalo.la
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+clustalo_CFLAGS = -fPIC