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msa


git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@102253 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 10/04/2015 00:12:33
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+This R package provides R interface to three multiple alignment software
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+packages not written by the authors of this R package. Furthermore, this
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+package also includes some more libraries and utilities that have not been
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+written by the package authors either. Copyright and license information
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+is enclosed below.
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+
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+--------------------------------------------------------------------------------
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+ClustalW:
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+
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+The copyright for ClustalW is held by Des Higgins, Julie Thompson, and
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+Toby Gibson.The project homepage can be found at
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+http://www.clustal.org/clustal2/. ClustalW is distributed under the Gnu Lesser
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+General Public License, Version 3.
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+
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+--------------------------------------------------------------------------------
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+ClustalOmega:
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+
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+The copyright for ClustalOmega is held by Fabian Sievers, Andreas Wilm,
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+David Dineen, Johannes Söding, and Michael Remmert. The project homepage can
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+be found at http://www.clustal.org/omega/. ClustalOmega is distributed
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+under the Gnu General Public License, Version 2.
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+
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+--------------------------------------------------------------------------------
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+Muscle:
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+
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+ClustalOmega was written by Robert Edgar. The project homepage can be found
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+at http://www.drive5.com/muscle/. Muscle has been released
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+to the public domain without any specific license.
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+
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+--------------------------------------------------------------------------------
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+argtable2:
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+
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+argtable was written by Stewart Heitmann. The project homepage can be found at
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+http://argtable.sourceforge.net/. argtable is distributed
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+under the Gnu General Public License, Version 2.
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+
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+--------------------------------------------------------------------------------
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+squid:
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+
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+squid was written by Sean Eddy. squid is distributed under the Gnu General 
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+Public License, Version 2.
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+
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+--------------------------------------------------------------------------------
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+texshade:
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+
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+texshade was written by Eric Beitz. The project homepage can be found at
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+http://www.ctan.org/tex-archive/macros/latex/contrib/texshade. texshade is
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+distributed under the Gnu General Public License, Version 2.
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+
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+--------------------------------------------------------------------------------
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+libgc:
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+
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+libgc was written by Hans-J. Boehm and Alan J. Demers. libgc has been released
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+to the public domain without any specific license. The program can be used for
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+any purpose provided that the following notices are retained:
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+
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+  Copyright 1988, 1989 Hans-J. Boehm, Alan J. Demers
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+  Copyright (c) 1991-1995 by Xerox Corporation.  All rights reserved.
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+  Copyright (c) 1996-1999 by Silicon Graphics.  All rights reserved.
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+  Copyright (c) 1999-2001 by Hewlett-Packard. All rights reserved.
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+
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+  THIS MATERIAL IS PROVIDED AS IS, WITH ABSOLUTELY NO WARRANTY EXPRESSED
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+  OR IMPLIED.  ANY USE IS AT YOUR OWN RISK.