1. msa
  2. cleanup
Browse code

Update of gc; version number bumped to 1.31.1

UBod authored on 05/12/2022 11:55:56
Showing1 changed files
cleanup
History View file @398d017
... ... 
@@ -6,46 +6,46 @@ rm -rf src/*.a
6 6 
 rm -rf src/*.o
7 7 
 rm -rf src/*.rds
8 8
9 
-## gc-7.6.12
10 
-rm -rf src/gc-7.6.12/.deps
11 
-rm -rf src/gc-7.6.12/.libs
12 
-rm -rf src/gc-7.6.12/*.o
13 
-rm -rf src/gc-7.6.12/*.la
14 
-rm -rf src/gc-7.6.12/*.lo
15 
-rm -rf src/gc-7.6.12/Makefile
16 
-rm -rf src/gc-7.6.12/bdw-gc.pc
17 
-rm -rf src/gc-7.6.12/config.log
18 
-rm -rf src/gc-7.6.12/config.status
19 
-rm -rf src/gc-7.6.12/cord/.deps
20 
-rm -rf src/gc-7.6.12/cord/.libs
21 
-rm -rf src/gc-7.6.12/cord/*.o
22 
-rm -rf src/gc-7.6.12/cord/*.lo
23 
-rm -rf src/gc-7.6.12/cord/*.la
24 
-rm -rf src/gc-7.6.12/include/private/config.h
25 
-rm -rf src/gc-7.6.12/include/private/stamp-h1
26 
-rm -rf src/gc-7.6.12/libatomic_ops/Makefile
27 
-rm -rf src/gc-7.6.12/libatomic_ops/config.log
28 
-rm -rf src/gc-7.6.12/libatomic_ops/config.status
29 
-rm -rf src/gc-7.6.12/libatomic_ops/doc/Makefile
30 
-rm -rf src/gc-7.6.12/libatomic_ops/pkgconfig/atomic_ops-uninstalled.pc
31 
-rm -rf src/gc-7.6.12/libatomic_ops/pkgconfig/atomic_ops.pc
32 
-rm -rf src/gc-7.6.12/libatomic_ops/src/.deps
33 
-rm -rf src/gc-7.6.12/libatomic_ops/src/.libs
34 
-rm -rf src/gc-7.6.12/libatomic_ops/src/*.o
35 
-rm -rf src/gc-7.6.12/libatomic_ops/src/*.la
36 
-rm -rf src/gc-7.6.12/libatomic_ops/src/*.lo
37 
-rm -rf src/gc-7.6.12/libatomic_ops/src/.dirstamp
38 
-rm -rf src/gc-7.6.12/libatomic_ops/src/Makefile
39 
-rm -rf src/gc-7.6.12/libatomic_ops/src/atomic_ops/Makefile
40 
-rm -rf src/gc-7.6.12/libatomic_ops/src/atomic_ops/sysdeps/Makefile
41 
-rm -rf src/gc-7.6.12/libatomic_ops/src/config.h
42 
-rm -rf src/gc-7.6.12/libatomic_ops/src/stamp-h1
43 
-rm -rf src/gc-7.6.12/libatomic_ops/tests/.deps
44 
-rm -rf src/gc-7.6.12/libatomic_ops/tests/Makefile
45 
-rm -rf src/gc-7.6.12/libtool
46 
-rm -rf src/gc-7.6.12/tests/.deps
47 
-rm -rf src/gc-7.6.12/cord/.dirstamp
48 
-rm -rf src/gc-7.6.12/m4/lt~obsolete.m4
9 
+## gc-8.2.2
10 
+rm -rf src/gc-8.2.2/.deps
11 
+rm -rf src/gc-8.2.2/.libs
12 
+rm -rf src/gc-8.2.2/*.o
13 
+rm -rf src/gc-8.2.2/*.la
14 
+rm -rf src/gc-8.2.2/*.lo
15 
+rm -rf src/gc-8.2.2/Makefile
16 
+rm -rf src/gc-8.2.2/bdw-gc.pc
17 
+rm -rf src/gc-8.2.2/config.log
18 
+rm -rf src/gc-8.2.2/config.status
19 
+rm -rf src/gc-8.2.2/cord/.deps
20 
+rm -rf src/gc-8.2.2/cord/.libs
21 
+rm -rf src/gc-8.2.2/cord/*.o
22 
+rm -rf src/gc-8.2.2/cord/*.lo
23 
+rm -rf src/gc-8.2.2/cord/*.la
24 
+rm -rf src/gc-8.2.2/include/private/config.h
25 
+rm -rf src/gc-8.2.2/include/private/stamp-h1
26 
+rm -rf src/gc-8.2.2/libatomic_ops/Makefile
27 
+rm -rf src/gc-8.2.2/libatomic_ops/config.log
28 
+rm -rf src/gc-8.2.2/libatomic_ops/config.status
29 
+rm -rf src/gc-8.2.2/libatomic_ops/doc/Makefile
30 
+rm -rf src/gc-8.2.2/libatomic_ops/pkgconfig/atomic_ops-uninstalled.pc
31 
+rm -rf src/gc-8.2.2/libatomic_ops/pkgconfig/atomic_ops.pc
32 
+rm -rf src/gc-8.2.2/libatomic_ops/src/.deps
33 
+rm -rf src/gc-8.2.2/libatomic_ops/src/.libs
34 
+rm -rf src/gc-8.2.2/libatomic_ops/src/*.o
35 
+rm -rf src/gc-8.2.2/libatomic_ops/src/*.la
36 
+rm -rf src/gc-8.2.2/libatomic_ops/src/*.lo
37 
+rm -rf src/gc-8.2.2/libatomic_ops/src/.dirstamp
38 
+rm -rf src/gc-8.2.2/libatomic_ops/src/Makefile
39 
+rm -rf src/gc-8.2.2/libatomic_ops/src/atomic_ops/Makefile
40 
+rm -rf src/gc-8.2.2/libatomic_ops/src/atomic_ops/sysdeps/Makefile
41 
+rm -rf src/gc-8.2.2/libatomic_ops/src/config.h
42 
+rm -rf src/gc-8.2.2/libatomic_ops/src/stamp-h1
43 
+rm -rf src/gc-8.2.2/libatomic_ops/tests/.deps
44 
+rm -rf src/gc-8.2.2/libatomic_ops/tests/Makefile
45 
+rm -rf src/gc-8.2.2/libtool
46 
+rm -rf src/gc-8.2.2/tests/.deps
47 
+rm -rf src/gc-8.2.2/cord/.dirstamp
48 
+rm -rf src/gc-8.2.2/m4/lt~obsolete.m4
49 49
50 50 
 ## -- Muscle
51 51 
 rm -rf src/Muscle/muscle.make.std???.txt
Browse code

Upgraded to GC 7.6.12 + corresponding changes in package

UBod authored on 15/10/2021 10:54:55
Showing1 changed files
cleanup
History View file @d236535
... ... 
@@ -6,46 +6,46 @@ rm -rf src/*.a
6 6 
 rm -rf src/*.o
7 7 
 rm -rf src/*.rds
8 8
9 
-## gc-7.2
10 
-rm -rf src/gc-7.2/.deps
11 
-rm -rf src/gc-7.2/.libs
12 
-rm -rf src/gc-7.2/*.o
13 
-rm -rf src/gc-7.2/*.la
14 
-rm -rf src/gc-7.2/*.lo
15 
-rm -rf src/gc-7.2/Makefile
16 
-rm -rf src/gc-7.2/bdw-gc.pc
17 
-rm -rf src/gc-7.2/config.log
18 
-rm -rf src/gc-7.2/config.status
19 
-rm -rf src/gc-7.2/cord/.deps
20 
-rm -rf src/gc-7.2/cord/.libs
21 
-rm -rf src/gc-7.2/cord/*.o
22 
-rm -rf src/gc-7.2/cord/*.lo
23 
-rm -rf src/gc-7.2/cord/*.la
24 
-rm -rf src/gc-7.2/include/private/config.h
25 
-rm -rf src/gc-7.2/include/private/stamp-h1
26 
-rm -rf src/gc-7.2/libatomic_ops/Makefile
27 
-rm -rf src/gc-7.2/libatomic_ops/config.log
28 
-rm -rf src/gc-7.2/libatomic_ops/config.status
29 
-rm -rf src/gc-7.2/libatomic_ops/doc/Makefile
30 
-rm -rf src/gc-7.2/libatomic_ops/pkgconfig/atomic_ops-uninstalled.pc
31 
-rm -rf src/gc-7.2/libatomic_ops/pkgconfig/atomic_ops.pc
32 
-rm -rf src/gc-7.2/libatomic_ops/src/.deps
33 
-rm -rf src/gc-7.2/libatomic_ops/src/.libs
34 
-rm -rf src/gc-7.2/libatomic_ops/src/*.o
35 
-rm -rf src/gc-7.2/libatomic_ops/src/*.la
36 
-rm -rf src/gc-7.2/libatomic_ops/src/*.lo
37 
-rm -rf src/gc-7.2/libatomic_ops/src/.dirstamp
38 
-rm -rf src/gc-7.2/libatomic_ops/src/Makefile
39 
-rm -rf src/gc-7.2/libatomic_ops/src/atomic_ops/Makefile
40 
-rm -rf src/gc-7.2/libatomic_ops/src/atomic_ops/sysdeps/Makefile
41 
-rm -rf src/gc-7.2/libatomic_ops/src/config.h
42 
-rm -rf src/gc-7.2/libatomic_ops/src/stamp-h1
43 
-rm -rf src/gc-7.2/libatomic_ops/tests/.deps
44 
-rm -rf src/gc-7.2/libatomic_ops/tests/Makefile
45 
-rm -rf src/gc-7.2/libtool
46 
-rm -rf src/gc-7.2/tests/.deps
47 
-rm -rf src/gc-7.2/cord/.dirstamp
48 
-rm -rf src/gc-7.2/m4/lt~obsolete.m4
9 
+## gc-7.6.12
10 
+rm -rf src/gc-7.6.12/.deps
11 
+rm -rf src/gc-7.6.12/.libs
12 
+rm -rf src/gc-7.6.12/*.o
13 
+rm -rf src/gc-7.6.12/*.la
14 
+rm -rf src/gc-7.6.12/*.lo
15 
+rm -rf src/gc-7.6.12/Makefile
16 
+rm -rf src/gc-7.6.12/bdw-gc.pc
17 
+rm -rf src/gc-7.6.12/config.log
18 
+rm -rf src/gc-7.6.12/config.status
19 
+rm -rf src/gc-7.6.12/cord/.deps
20 
+rm -rf src/gc-7.6.12/cord/.libs
21 
+rm -rf src/gc-7.6.12/cord/*.o
22 
+rm -rf src/gc-7.6.12/cord/*.lo
23 
+rm -rf src/gc-7.6.12/cord/*.la
24 
+rm -rf src/gc-7.6.12/include/private/config.h
25 
+rm -rf src/gc-7.6.12/include/private/stamp-h1
26 
+rm -rf src/gc-7.6.12/libatomic_ops/Makefile
27 
+rm -rf src/gc-7.6.12/libatomic_ops/config.log
28 
+rm -rf src/gc-7.6.12/libatomic_ops/config.status
29 
+rm -rf src/gc-7.6.12/libatomic_ops/doc/Makefile
30 
+rm -rf src/gc-7.6.12/libatomic_ops/pkgconfig/atomic_ops-uninstalled.pc
31 
+rm -rf src/gc-7.6.12/libatomic_ops/pkgconfig/atomic_ops.pc
32 
+rm -rf src/gc-7.6.12/libatomic_ops/src/.deps
33 
+rm -rf src/gc-7.6.12/libatomic_ops/src/.libs
34 
+rm -rf src/gc-7.6.12/libatomic_ops/src/*.o
35 
+rm -rf src/gc-7.6.12/libatomic_ops/src/*.la
36 
+rm -rf src/gc-7.6.12/libatomic_ops/src/*.lo
37 
+rm -rf src/gc-7.6.12/libatomic_ops/src/.dirstamp
38 
+rm -rf src/gc-7.6.12/libatomic_ops/src/Makefile
39 
+rm -rf src/gc-7.6.12/libatomic_ops/src/atomic_ops/Makefile
40 
+rm -rf src/gc-7.6.12/libatomic_ops/src/atomic_ops/sysdeps/Makefile
41 
+rm -rf src/gc-7.6.12/libatomic_ops/src/config.h
42 
+rm -rf src/gc-7.6.12/libatomic_ops/src/stamp-h1
43 
+rm -rf src/gc-7.6.12/libatomic_ops/tests/.deps
44 
+rm -rf src/gc-7.6.12/libatomic_ops/tests/Makefile
45 
+rm -rf src/gc-7.6.12/libtool
46 
+rm -rf src/gc-7.6.12/tests/.deps
47 
+rm -rf src/gc-7.6.12/cord/.dirstamp
48 
+rm -rf src/gc-7.6.12/m4/lt~obsolete.m4
49 49
50 50 
 ## -- Muscle
51 51 
 rm -rf src/Muscle/muscle.make.std???.txt
Browse code

add package to the repository

msa


git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@102253 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 10/04/2015 00:12:33
Showing1 changed files
cleanup
History View file @dafeef0
1 1 
new file mode 100755
... ... 
@@ -0,0 +1,138 @@
1 
+#!/bin/bash
2 
+
3 
+## msa
4 
+rm -rf src/*.so
5 
+rm -rf src/*.a
6 
+rm -rf src/*.o
7 
+rm -rf src/*.rds
8 
+
9 
+## gc-7.2
10 
+rm -rf src/gc-7.2/.deps
11 
+rm -rf src/gc-7.2/.libs
12 
+rm -rf src/gc-7.2/*.o
13 
+rm -rf src/gc-7.2/*.la
14 
+rm -rf src/gc-7.2/*.lo
15 
+rm -rf src/gc-7.2/Makefile
16 
+rm -rf src/gc-7.2/bdw-gc.pc
17 
+rm -rf src/gc-7.2/config.log
18 
+rm -rf src/gc-7.2/config.status
19 
+rm -rf src/gc-7.2/cord/.deps
20 
+rm -rf src/gc-7.2/cord/.libs
21 
+rm -rf src/gc-7.2/cord/*.o
22 
+rm -rf src/gc-7.2/cord/*.lo
23 
+rm -rf src/gc-7.2/cord/*.la
24 
+rm -rf src/gc-7.2/include/private/config.h
25 
+rm -rf src/gc-7.2/include/private/stamp-h1
26 
+rm -rf src/gc-7.2/libatomic_ops/Makefile
27 
+rm -rf src/gc-7.2/libatomic_ops/config.log
28 
+rm -rf src/gc-7.2/libatomic_ops/config.status
29 
+rm -rf src/gc-7.2/libatomic_ops/doc/Makefile
30 
+rm -rf src/gc-7.2/libatomic_ops/pkgconfig/atomic_ops-uninstalled.pc
31 
+rm -rf src/gc-7.2/libatomic_ops/pkgconfig/atomic_ops.pc
32 
+rm -rf src/gc-7.2/libatomic_ops/src/.deps
33 
+rm -rf src/gc-7.2/libatomic_ops/src/.libs
34 
+rm -rf src/gc-7.2/libatomic_ops/src/*.o
35 
+rm -rf src/gc-7.2/libatomic_ops/src/*.la
36 
+rm -rf src/gc-7.2/libatomic_ops/src/*.lo
37 
+rm -rf src/gc-7.2/libatomic_ops/src/.dirstamp
38 
+rm -rf src/gc-7.2/libatomic_ops/src/Makefile
39 
+rm -rf src/gc-7.2/libatomic_ops/src/atomic_ops/Makefile
40 
+rm -rf src/gc-7.2/libatomic_ops/src/atomic_ops/sysdeps/Makefile
41 
+rm -rf src/gc-7.2/libatomic_ops/src/config.h
42 
+rm -rf src/gc-7.2/libatomic_ops/src/stamp-h1
43 
+rm -rf src/gc-7.2/libatomic_ops/tests/.deps
44 
+rm -rf src/gc-7.2/libatomic_ops/tests/Makefile
45 
+rm -rf src/gc-7.2/libtool
46 
+rm -rf src/gc-7.2/tests/.deps
47 
+rm -rf src/gc-7.2/cord/.dirstamp
48 
+rm -rf src/gc-7.2/m4/lt~obsolete.m4
49 
+
50 
+## -- Muscle
51 
+rm -rf src/Muscle/muscle.make.std???.txt
52 
+rm -rf src/Muscle/*.o
53 
+rm -rf src/Muscle/*.a
54 
+rm -rf src/Muscle/*.so
55 
+rm -rf src/Muscle/*.rds
56 
+
57 
+## -- ClustalW
58 
+rm -rf src/ClustalW/config.status
59 
+rm -rf src/ClustalW/autom4te.cache
60 
+rm -rf src/ClustalW/Makefile
61 
+rm -rf src/ClustalW/config.log
62 
+rm -rf src/ClustalW/src/clustalw2
63 
+rm -rf src/ClustalW/src/stamp-h1
64 
+rm -rf src/ClustalW/src/.deps
65 
+rm -rf src/ClustalW/src/config.h
66 
+rm -rf src/ClustalW/src/Makefile
67 
+rm -rf src/ClustalW/m4/Makefile
68 
+rm -rf src/ClustalW/src/*.o
69 
+rm -rf src/ClustalW/src/alignment/*.o
70 
+rm -rf src/ClustalW/src/fileInput/*.o
71 
+rm -rf src/ClustalW/src/general/*.o
72 
+rm -rf src/ClustalW/src/interface/*.o
73 
+rm -rf src/ClustalW/src/multipleAlign/*.o
74 
+rm -rf src/ClustalW/src/pairwise/*.o
75 
+rm -rf src/ClustalW/src/substitutionMatrix/*.o
76 
+rm -rf src/ClustalW/src/tree/*.o
77 
+rm -rf src/ClustalW/src/tree/UPGMA/*.o
78 
+rm -rf src/ClustalW/src/.deps
79 
+rm -rf src/ClustalW/src/*.a
80 
+rm -rf src/ClustalW/src/*.so
81 
+rm -rf src/ClustalW/src/*.rds
82 
+
83 
+## -- ClustalOmega
84 
+rm -rf src/ClustalOmega/Makefile
85 
+rm -rf src/ClustalOmega/clustalo.pc
86 
+rm -rf src/ClustalOmega/_configs.sed
87 
+rm -rf src/ClustalOmega/autom4te.cache
88 
+rm -rf src/ClustalOmega/config.log
89 
+rm -rf src/ClustalOmega/config.status
90 
+rm -rf src/ClustalOmega/libtool
91 
+rm -rf src/ClustalOmega/src/stamp-h1
92 
+rm -rf src/ClustalOmega/src/config.h
93 
+rm -rf src/ClustalOmega/src/.deps
94 
+rm -rf src/ClustalOmega/src/.libs
95 
+rm -rf src/ClustalOmega/src/*.la
96 
+rm -rf src/ClustalOmega/src/*.o
97 
+rm -rf src/ClustalOmega/src/*.lo
98 
+rm -rf src/ClustalOmega/src/Makefile
99 
+rm -rf src/ClustalOmega/src/clustalo
100 
+rm -rf src/ClustalOmega/src/kmpp/.deps
101 
+rm -rf src/ClustalOmega/src/kmpp/.libs
102 
+rm -rf src/ClustalOmega/src/kmpp/*.la
103 
+rm -rf src/ClustalOmega/src/kmpp/*.o
104 
+rm -rf src/ClustalOmega/src/kmpp/*.lo
105 
+rm -rf src/ClustalOmega/src/kmpp/Makefile
106 
+rm -rf src/ClustalOmega/src/clustal/.deps
107 
+rm -rf src/ClustalOmega/src/clustal/.libs
108 
+rm -rf src/ClustalOmega/src/clustal/*.o
109 
+rm -rf src/ClustalOmega/src/clustal/*.lo
110 
+rm -rf src/ClustalOmega/src/clustal/*.la
111 
+rm -rf src/ClustalOmega/src/clustal/Makefile
112 
+rm -rf src/ClustalOmega/src/hhalign/.deps
113 
+rm -rf src/ClustalOmega/src/hhalign/.libs
114 
+rm -rf src/ClustalOmega/src/hhalign/*.la
115 
+rm -rf src/ClustalOmega/src/hhalign/*.o
116 
+rm -rf src/ClustalOmega/src/hhalign/*.lo
117 
+rm -rf src/ClustalOmega/src/hhalign/Makefile
118 
+rm -rf src/ClustalOmega/src/squid/.deps
119 
+rm -rf src/ClustalOmega/src/squid/.libs
120 
+rm -rf src/ClustalOmega/src/squid/*.la
121 
+rm -rf src/ClustalOmega/src/squid/*.o
122 
+rm -rf src/ClustalOmega/src/squid/*.lo
123 
+rm -rf src/ClustalOmega/src/squid/Makefile
124 
+rm -rf src/ClustalOmega/src/argtable2/.deps
125 
+rm -rf src/ClustalOmega/src/argtable2/.libs
126 
+rm -rf src/ClustalOmega/src/argtable2/*.la
127 
+rm -rf src/ClustalOmega/src/argtable2/*.o
128 
+rm -rf src/ClustalOmega/src/argtable2/*.lo
129 
+rm -rf src/ClustalOmega/src/argtable2/Makefile
130 
+rm -rf src/ClustalOmega/src/exceptions4c/.deps
131 
+rm -rf src/ClustalOmega/src/exceptions4c/.libs
132 
+rm -rf src/ClustalOmega/src/exceptions4c/*.la
133 
+rm -rf src/ClustalOmega/src/exceptions4c/*.o
134 
+rm -rf src/ClustalOmega/src/exceptions4c/*.lo
135 
+rm -rf src/ClustalOmega/src/exceptions4c/Makefile
136 
+rm -rf src/ClustalOmega/src/*.a
137 
+rm -rf src/ClustalOmega/src/*.so
138 
+rm -rf src/ClustalOmega/src/*.rds