UBodenhofer authored on 29/04/2021 12:32:02
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+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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+%%%%% %%%%% |
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+%%%%% Ciliate macronuclear genetic code definitions %%%%% |
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+%%%%% %%%%% |
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+%%%%% Only exchanges compared to the standard code must be defined. %%%%% |
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+%%%%% %%%%% |
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+%%%%% (The last codon of the list is used for backtranslations %%%%% |
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+%%%%% from protein to DNA sequences---therefore the wobbles) %%%%% |
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+%%%%% %%%%% |
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+%%%%% %%%%% |
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+%%%%% Activate these definitions for your alignment by the following %%%%% |
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+%%%%% command in the texshade environment: %%%%% |
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+%%%%% %%%%% |
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+%%%%% \geneticcode{ciliate} %%%%%
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+%%%%% %%%%% |
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+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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+\codon{Q}{TAA,TAG,UAA,UAG,YAR}
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