@@ -1,8 +1,8 @@

 Package: msa

 Type: Package

 Title: Multiple Sequence Alignment

-Version: 1.7.1

-Date: 2017-03-31

+Version: 1.7.2

+Date: 2017-04-17

 Author: Enrico Bonatesta, Christoph Horejs-Kainrath, Ulrich Bodenhofer

 Maintainer: Ulrich Bodenhofer <bodenhofer@bioinf.jku.at>

 Description: The 'msa' package provides a unified R/Bioconductor interface to

@@ -1,6 +1,9 @@

 Change history of package msa:

 ==============================

+Version 1.7.2:

+- fix for new clang 4 compiler on Mac OS

+

 Version 1.7.1:

 - additional conversions implemented for msaConvert() function

 - added a new method msaConsensusSequence() that extends the

@@ -50,8 +50,10 @@ inline int iround(double x) {return int(floor(x+0.5));}

 inline double fmean(double x, double y, double d) { return pow( (pow(x,d)+pow(y,d))/2 ,1./d);}

 // log base 2

-inline float log2(float x)  {return (x<=0? (float)(-100000):1.442695041*log(x));}

-inline float log10(float x) {return (x<=0? (float)(-100000):0.434294481*log(x));}

+// inline float log2(float x)  {return (x<=0? (float)(-100000):1.442695041*log(x));}

+// inline float log10(float x) {return (x<=0? (float)(-100000):0.434294481*log(x));}

+#define log2 log2f

+#define log10 log10f

 /////////////////////////////////////////////////////////////////////////////////////

@@ -889,6 +889,9 @@ bibliography below).

 \section{Change Log}

 \begin{description}

+\item[Version 1.7.2:] \mbox{ }  \begin{itemize}

+   \item fix for new \verb+clang+ 4 compiler on Mac OS

+  \end{itemize}

 \item[Version 1.7.1:] \mbox{ }  \begin{itemize}

    \item additional conversions implemented for \verb+msaConvert()+ function

    \item added a new method \verb+msaConsensusSequence()+ that extends the

@@ -925,7 +928,7 @@ bibliography below).

 \item[Version 1.3.7:] \mbox{ }  \begin{itemize}

    \item fixes in \verb+msaPrettyPrint()+ function

   \end{itemize}

-\item[Version 1.3.6:] \mbox{ }  \begin{itemize}

+\item[Version 1.3.6:] \mbox) { }  \begin{itemize}

    \item \verb+msaPrettyPrint()+ now also accepts dashes in file names

    \item added section about pretty-printing wide alignments to package vignette

   \end{itemize}