@@ -1,8 +1,8 @@

 Package: msa

 Type: Package

 Title: Multiple Sequence Alignment

-Version: 1.11.1

-Date: 2018-04-23

+Version: 1.11.2

+Date: 2018-04-27

 Author: Enrico Bonatesta, Christoph Horejs-Kainrath, Ulrich Bodenhofer

 Maintainer: Ulrich Bodenhofer <bodenhofer@bioinf.jku.at>

 Description: The 'msa' package provides a unified R/Bioconductor interface to

@@ -5,6 +5,9 @@ Version 1.12.0:

 - release as part of Bioconductor 3.7

 Version 1.11.1:

+- minor fix in ClustalW

+

+Version 1.11.2:

 - fix of code for using custom substitution matrices in ClustalW

 Version 1.11.0:

@@ -519,7 +519,7 @@ SEXP RClustalW(SEXP rInputSeqs,

             secondvalue1<<secondvalue2;

             string secondvalue = secondvalue1.str();

             string rangeVector= " RANGE=" + firstvalue + "," + secondvalue;

-            if (!(firstvalue2 == -1 | secondvalue2 == -1)) {

+            if (!(firstvalue2 == -1 || secondvalue2 == -1)) {

                 args.push_back(std::string(rangeVector));

             }

         }

@@ -890,6 +890,9 @@ bibliography below).

 \begin{description}

 \item[Version 1.12.0:] release as part of Bioconductor 3.7

+\item[Version 1.11.2:] \mbox{ }  \begin{itemize}

+   \item minor fix in ClustalW

+  \end{itemize}

 \item[Version 1.11.1:] \mbox{ }  \begin{itemize}

    \item fix of code for using custom substitution matrices in ClustalW

   \end{itemize}