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Fixes for Mac Mavericks platform; version number bumped to 0.99.4

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@102336 bc3139a8-67e5-0310-9ffc-ced21a209358

Ulrich Bodenhofer authored on 12/04/2015 00:13:25
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 Package: msa
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 Type: Package
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 Title: Multiple Sequence Alignment
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-Version: 0.99.3
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-Date: 2015-04-10
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+Version: 0.99.4
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+Date: 2015-04-11
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 Author: Enrico Bonatesta, Christoph Horejs-Kainrath, Ulrich Bodenhofer
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 Maintainer: Ulrich Bodenhofer <bodenhofer@bioinf.jku.at>
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 Description: This package provides a unified R/Bioconductor interface to the
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@@ -13,21 +13,19 @@ Description: This package provides a unified R/Bioconductor interface to the
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 	     alignment algorithms are complemented by a function for
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 	     pretty-printing multiple sequence alignments using the LaTeX
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 	     package TeXshade.
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+URL: http://www.bioinf.jku.at/software/msa/
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 License: GPL (>= 2)
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 Copyright: See file inst/COPYRIGHT
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 Depends: R (>= 3.1.0), methods, Biostrings (>= 2.30.0)
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-Imports: Rcpp (>= 0.11.1), BiocGenerics, IRanges (>= 1.20.0),
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-        S4Vectors, tools
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+Imports: Rcpp (>= 0.11.1), BiocGenerics, IRanges (>= 1.20.0), S4Vectors,
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+	 tools
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 Suggests: Biobase, knitr
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 LinkingTo: Rcpp
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 SystemRequirements: GNU make
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 VignetteBuilder: knitr
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 LazyLoad: yes
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-Collate: AllClasses.R AllGenerics.R params-methods.R version-methods.R
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-        helperFunctions.R inputChecks.R convertRows.R msaPrettyPrint.R
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-        print-methods.R show-methods.R msa.R msaMuscle.R msaClustalW.R
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-        msaClustalOmega.R
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-biocViews: MultipleSequenceAlignment, Alignment, MultipleComparison,
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-        Sequencing
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-NeedsCompilation: yes
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-Packaged: 2015-04-10 22:07:02 UTC; bodenhof
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+Collate: AllClasses.R AllGenerics.R params-methods.R version-methods.R 
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+         helperFunctions.R inputChecks.R convertRows.R msaPrettyPrint.R
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+	 print-methods.R show-methods.R msa.R msaMuscle.R msaClustalW.R 
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+         msaClustalOmega.R
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+biocViews: MultipleSequenceAlignment, Alignment, MultipleComparison, Sequencing
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 OS := $(shell uname)
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 ifeq ($(OS), Darwin)
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-	PKG_LIBS=`Rscript -e "Rcpp:::LdFlags()"` -Wl,-all_load ./libgc.a ./libClustalW.a ./libClustalOmega.a ./libMuscle.a  -Wl,-noall_load
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+	PKG_LIBS=`Rscript -e "Rcpp:::LdFlags()"` -Wl,-all_load ./libgc.a ./libClustalW.a ./libClustalOmega.a ./libMuscle.a
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 else 
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 	PKG_LIBS=`Rscript -e "Rcpp:::LdFlags()"` -Wl,--whole-archive ./libgc.a ./libClustalW.a ./libClustalOmega.a ./libMuscle.a  -Wl,--no-whole-archive
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 endif