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fix of msa() function; version number bumped to 1.1.1

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@104866 bc3139a8-67e5-0310-9ffc-ced21a209358

Ulrich Bodenhofer authored on 12/06/2015 08:49:45
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 Package: msa
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 Type: Package
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 Title: Multiple Sequence Alignment
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-Version: 1.1.0
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-Date: 2015-04-16
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+Version: 1.1.1
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+Date: 2015-06-12
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 Author: Enrico Bonatesta, Christoph Horejs-Kainrath, Ulrich Bodenhofer
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 Maintainer: Ulrich Bodenhofer <bodenhofer@bioinf.jku.at>
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 Description: This package provides a unified R/Bioconductor interface to the
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@@ -13,10 +13,19 @@ msa <- function(inputSeqs,
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 {
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     method <- match.arg(method)
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-    msaArgs <- as.list(match.call(expand.dots=TRUE)[-1])
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-    msaArgs[["method"]] <- NULL
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+    msaFun <- match.fun(paste0("msa", method))
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-    out <- do.call(paste0("msa", method), msaArgs)
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+    out <- msaFun(inputSeqs=inputSeqs,
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+                  cluster=cluster,
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+                  gapOpening=gapOpening,
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+                  gapExtension=gapExtension,
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+                  maxiters=maxiters,
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+                  substitutionMatrix=substitutionMatrix,
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+                  type=type,
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+                  order=order,
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+                  verbose=verbose,
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+                  help=help,
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+                  ...)
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     if (is(out, "MsaMetaData"))
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         out@call <- deparse(sys.call())
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 Change history of package msa:
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 ==============================
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+Version 1.1.1:
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+- fix of msa() function
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+
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+Version 1.1.0:
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+- new branch for Bioconductor 3.2 devel
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+
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 Version 1.0.0:
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 - first official release as part of Bioconductor 3.1
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@@ -613,7 +613,9 @@ bibliography below).
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 \section{Change Log}
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 \begin{description}
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-\item[Version 0.99.0:] first version submitted to Bioconductor
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+\item[Version 1.1.1:] fix of \verb+msa()+ function
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+\item[Version 1.1.0:] new branch for Bioconductor 3.2 devel
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+\item[Version 1.0.0:] first official release as part of Bioconductor 3.1
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 \end{description}
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 %\bibliographystyle{plain}