#ifndef _SRC_CLUSTAL_OMEGA_CONFIG_H
#define _SRC_CLUSTAL_OMEGA_CONFIG_H 1
 
/* src/clustal-omega-config.h. Generated automatically at end of configure. */
/* src/config.h.  Generated from config.h.in by configure.  */
/* src/config.h.in.  Generated from configure.ac by autoheader.  */

/* Define if building universal (internal helper macro) */
/* #undef AC_APPLE_UNIVERSAL_BUILD */

/* Let all files know they are being used inside Clustal Omega */
#ifndef CLUSTAL_OMEGA_CLUSTALO
#define CLUSTAL_OMEGA_CLUSTALO 1
#endif

/* This is a CYGWIN system */
/* #undef CYGWIN */

/* This is a Darwin system */
/* #undef DARWIN */

/* Define to 1 if you have the <argtable2.h> header file. */
/* #undef HAVE_ARGTABLE2_H */

/* Define to 1 if you have the <assert.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_ASSERT_H
#define CLUSTAL_OMEGA_HAVE_ASSERT_H 1
#endif

/* Define to 1 if you have the <ctype.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_CTYPE_H
#define CLUSTAL_OMEGA_HAVE_CTYPE_H 1
#endif

/* Define to 1 if you have the <dlfcn.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_DLFCN_H
#define CLUSTAL_OMEGA_HAVE_DLFCN_H 1
#endif

/* Define to 1 if you have the <float.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_FLOAT_H
#define CLUSTAL_OMEGA_HAVE_FLOAT_H 1
#endif

/* Define to 1 if you have the `fseek64' function. */
/* #undef HAVE_FSEEK64 */

/* Define to 1 if you have the `fseeko' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FSEEKO
#define CLUSTAL_OMEGA_HAVE_FSEEKO 1
#endif

/* Define to 1 if you have the `fseeko64' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FSEEKO64
#define CLUSTAL_OMEGA_HAVE_FSEEKO64 1
#endif

/* Define to 1 if you have the `ftell64' function. */
/* #undef HAVE_FTELL64 */

/* Define to 1 if you have the `ftello' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FTELLO
#define CLUSTAL_OMEGA_HAVE_FTELLO 1
#endif

/* Define to 1 if you have the `ftello64' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FTELLO64
#define CLUSTAL_OMEGA_HAVE_FTELLO64 1
#endif

/* Define to 1 if you have the <inttypes.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_INTTYPES_H
#define CLUSTAL_OMEGA_HAVE_INTTYPES_H 1
#endif

/* Define to 1 if you have the `argtable2' library (-largtable2). */
/* #undef HAVE_LIBARGTABLE2 */

/* Define to 1 if you have the `m' library (-lm). */
#ifndef CLUSTAL_OMEGA_HAVE_LIBM
#define CLUSTAL_OMEGA_HAVE_LIBM 1
#endif

/* Define to 1 if you have the <limits.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_LIMITS_H
#define CLUSTAL_OMEGA_HAVE_LIMITS_H 1
#endif

/* Has log2() */
#ifndef CLUSTAL_OMEGA_HAVE_LOG2
#define CLUSTAL_OMEGA_HAVE_LOG2 1
#endif

/* Define to 1 if you have the <math.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_MATH_H
#define CLUSTAL_OMEGA_HAVE_MATH_H 1
#endif

/* Define to 1 if you have the <memory.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_MEMORY_H
#define CLUSTAL_OMEGA_HAVE_MEMORY_H 1
#endif

/* Define to 1 if you have the `ntohl' function. */
#ifndef CLUSTAL_OMEGA_HAVE_NTOHL
#define CLUSTAL_OMEGA_HAVE_NTOHL 1
#endif

/* Define to 1 if you have the `ntohs' function. */
#ifndef CLUSTAL_OMEGA_HAVE_NTOHS
#define CLUSTAL_OMEGA_HAVE_NTOHS 1
#endif

/* Define to 1 if you have the `ntonl' function. */
/* #undef HAVE_NTONL */

/* Define to 1 if you have the `ntons' function. */
/* #undef HAVE_NTONS */

/* Defined if OpenMP should and can be used */
#ifndef CLUSTAL_OMEGA_HAVE_OPENMP
#define CLUSTAL_OMEGA_HAVE_OPENMP 1
#endif

/* Define to 1 if you have the <stdarg.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDARG_H
#define CLUSTAL_OMEGA_HAVE_STDARG_H 1
#endif

/* Define to 1 if you have the <stdint.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDINT_H
#define CLUSTAL_OMEGA_HAVE_STDINT_H 1
#endif

/* Define to 1 if you have the <stdio.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDIO_H
#define CLUSTAL_OMEGA_HAVE_STDIO_H 1
#endif

/* Define to 1 if you have the <stdlib.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDLIB_H
#define CLUSTAL_OMEGA_HAVE_STDLIB_H 1
#endif

/* Define to 1 if you have the <strings.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STRINGS_H
#define CLUSTAL_OMEGA_HAVE_STRINGS_H 1
#endif

/* Define to 1 if you have the <string.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STRING_H
#define CLUSTAL_OMEGA_HAVE_STRING_H 1
#endif

/* Define to 1 if you have the `stroul' function. */
/* #undef HAVE_STROUL */

/* Define to 1 if you have the `strtoull' function. */
#ifndef CLUSTAL_OMEGA_HAVE_STRTOULL
#define CLUSTAL_OMEGA_HAVE_STRTOULL 1
#endif

/* Define to 1 if you have the <sys/stat.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_SYS_STAT_H
#define CLUSTAL_OMEGA_HAVE_SYS_STAT_H 1
#endif

/* Define to 1 if you have the <sys/types.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_SYS_TYPES_H
#define CLUSTAL_OMEGA_HAVE_SYS_TYPES_H 1
#endif

/* Define to 1 if you have the <time.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_TIME_H
#define CLUSTAL_OMEGA_HAVE_TIME_H 1
#endif

/* Define to 1 if you have the <unistd.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_UNISTD_H
#define CLUSTAL_OMEGA_HAVE_UNISTD_H 1
#endif

/* This is a LINUX system */
#ifndef CLUSTAL_OMEGA_LINUX
#define CLUSTAL_OMEGA_LINUX 1
#endif

/* Define to the sub-directory in which libtool stores uninstalled libraries.
   */
#ifndef CLUSTAL_OMEGA_LT_OBJDIR
#define CLUSTAL_OMEGA_LT_OBJDIR ".libs/"
#endif

/* This is a MinGW system */
/* #undef MINGW */

/* No-debug Mode */
#ifndef CLUSTAL_OMEGA_NDEBUG
#define CLUSTAL_OMEGA_NDEBUG /**/
#endif

/* Some strange OS */
/* #undef OTHEROS */

/* Name of package */
#ifndef CLUSTAL_OMEGA_PACKAGE
#define CLUSTAL_OMEGA_PACKAGE "clustal-omega"
#endif

/* Define to the address where bug reports for this package should be sent. */
#ifndef CLUSTAL_OMEGA_PACKAGE_BUGREPORT
#define CLUSTAL_OMEGA_PACKAGE_BUGREPORT "clustalw@ucd.ie"
#endif

/* The package code name */
#ifndef CLUSTAL_OMEGA_PACKAGE_CODENAME
#define CLUSTAL_OMEGA_PACKAGE_CODENAME "AndreaGiacomo"
#endif

/* Define to the full name of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_NAME
#define CLUSTAL_OMEGA_PACKAGE_NAME "Clustal Omega"
#endif

/* Define to the full name and version of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_STRING
#define CLUSTAL_OMEGA_PACKAGE_STRING "Clustal Omega 1.2.0"
#endif

/* Define to the one symbol short name of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_TARNAME
#define CLUSTAL_OMEGA_PACKAGE_TARNAME "clustal-omega"
#endif

/* Define to the home page for this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_URL
#define CLUSTAL_OMEGA_PACKAGE_URL ""
#endif

/* Define to the version of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_VERSION
#define CLUSTAL_OMEGA_PACKAGE_VERSION "1.2.0"
#endif

/* The size of `fpos_t', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_FPOS_T
#define CLUSTAL_OMEGA_SIZEOF_FPOS_T 16
#endif

/* The size of `unsigned int', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT 4
#endif

/* The size of `unsigned long', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 8
#endif

/* The size of `unsigned long long', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG 8
#endif

/* The size of `unsigned short', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT 2
#endif

/* This is a Solaris system */
/* #undef SOLARIS */

/* This is a BSD system */
/* #undef SOMEBSD */

/* Define to 1 if you have the ANSI C header files. */
#ifndef CLUSTAL_OMEGA_STDC_HEADERS
#define CLUSTAL_OMEGA_STDC_HEADERS 1
#endif

/* Enable extensions on AIX 3, Interix.  */
#ifndef _ALL_SOURCE
# define _ALL_SOURCE 1
#endif
/* Enable GNU extensions on systems that have them.  */
#ifndef _GNU_SOURCE
# define _GNU_SOURCE 1
#endif
/* Enable threading extensions on Solaris.  */
#ifndef _POSIX_PTHREAD_SEMANTICS
# define _POSIX_PTHREAD_SEMANTICS 1
#endif
/* Enable extensions on HP NonStop.  */
#ifndef _TANDEM_SOURCE
# define _TANDEM_SOURCE 1
#endif
/* Enable general extensions on Solaris.  */
#ifndef __EXTENSIONS__
# define __EXTENSIONS__ 1
#endif


/* Version number of package */
#ifndef CLUSTAL_OMEGA_VERSION
#define CLUSTAL_OMEGA_VERSION "1.2.0"
#endif

/* Define if using the dmalloc debugging malloc package */
/* #undef WITH_DMALLOC */

/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
   significant byte first (like Motorola and SPARC, unlike Intel). */
#if defined AC_APPLE_UNIVERSAL_BUILD
# if defined __BIG_ENDIAN__
#  define WORDS_BIGENDIAN 1
# endif
#else
# ifndef WORDS_BIGENDIAN
/* #  undef WORDS_BIGENDIAN */
# endif
#endif

/* Define to 1 if on MINIX. */
/* #undef _MINIX */

/* Define to 2 if the system does not provide POSIX.1 features except with
   this defined. */
/* #undef _POSIX_1_SOURCE */

/* Define to 1 if you need to in order for `stat' and other things to work. */
/* #undef _POSIX_SOURCE */

/* Define to empty if `const' does not conform to ANSI C. */
/* #undef const */

/* Define to `__inline__' or `__inline' if that's what the C compiler
   calls it, or to nothing if 'inline' is not supported under any name.  */
#ifndef __cplusplus
/* #undef inline */
#endif

/* Define to `long int' if <sys/types.h> does not define. */
/* #undef off_t */

/* Define to `unsigned int' if <sys/types.h> does not define. */
/* #undef size_t */
 
/* once: _SRC_CLUSTAL_OMEGA_CONFIG_H */
#endif