src/ClustalOmega/src/clustal-omega-config.h
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 #ifndef _SRC_CLUSTAL_OMEGA_CONFIG_H
 #define _SRC_CLUSTAL_OMEGA_CONFIG_H 1
  
 /* src/clustal-omega-config.h. Generated automatically at end of configure. */
 /* src/config.h.  Generated from config.h.in by configure.  */
 /* src/config.h.in.  Generated from configure.ac by autoheader.  */
 
 /* Define if building universal (internal helper macro) */
 /* #undef AC_APPLE_UNIVERSAL_BUILD */
 
 /* Let all files know they are being used inside Clustal Omega */
 #ifndef CLUSTAL_OMEGA_CLUSTALO
 #define CLUSTAL_OMEGA_CLUSTALO 1
 #endif
 
 /* This is a CYGWIN system */
 /* #undef CYGWIN */
 
 /* This is a Darwin system */
 /* #undef DARWIN */
 
 /* Define to 1 if you have the <argtable2.h> header file. */
 /* #undef HAVE_ARGTABLE2_H */
 
 /* Define to 1 if you have the <assert.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_ASSERT_H
 #define CLUSTAL_OMEGA_HAVE_ASSERT_H 1
 #endif
 
 /* Define to 1 if you have the <ctype.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_CTYPE_H
 #define CLUSTAL_OMEGA_HAVE_CTYPE_H 1
 #endif
 
 /* Define to 1 if you have the <dlfcn.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_DLFCN_H
 #define CLUSTAL_OMEGA_HAVE_DLFCN_H 1
 #endif
 
 /* Define to 1 if you have the <float.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_FLOAT_H
 #define CLUSTAL_OMEGA_HAVE_FLOAT_H 1
 #endif
 
 /* Define to 1 if you have the `fseek64' function. */
 /* #undef HAVE_FSEEK64 */
 
 /* Define to 1 if you have the `fseeko' function. */
 #ifndef CLUSTAL_OMEGA_HAVE_FSEEKO
 #define CLUSTAL_OMEGA_HAVE_FSEEKO 1
 #endif
 
 /* Define to 1 if you have the `fseeko64' function. */
 #ifndef CLUSTAL_OMEGA_HAVE_FSEEKO64
 #define CLUSTAL_OMEGA_HAVE_FSEEKO64 1
 #endif
 
 /* Define to 1 if you have the `ftell64' function. */
 /* #undef HAVE_FTELL64 */
 
 /* Define to 1 if you have the `ftello' function. */
 #ifndef CLUSTAL_OMEGA_HAVE_FTELLO
 #define CLUSTAL_OMEGA_HAVE_FTELLO 1
 #endif
 
 /* Define to 1 if you have the `ftello64' function. */
 #ifndef CLUSTAL_OMEGA_HAVE_FTELLO64
 #define CLUSTAL_OMEGA_HAVE_FTELLO64 1
 #endif
 
 /* Define to 1 if you have the <inttypes.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_INTTYPES_H
 #define CLUSTAL_OMEGA_HAVE_INTTYPES_H 1
 #endif
 
 /* Define to 1 if you have the `argtable2' library (-largtable2). */
 /* #undef HAVE_LIBARGTABLE2 */
 
 /* Define to 1 if you have the `m' library (-lm). */
 #ifndef CLUSTAL_OMEGA_HAVE_LIBM
 #define CLUSTAL_OMEGA_HAVE_LIBM 1
 #endif
 
 /* Define to 1 if you have the <limits.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_LIMITS_H
 #define CLUSTAL_OMEGA_HAVE_LIMITS_H 1
 #endif
 
 /* Has log2() */
 #ifndef CLUSTAL_OMEGA_HAVE_LOG2
 #define CLUSTAL_OMEGA_HAVE_LOG2 1
 #endif
 
 /* Define to 1 if you have the <math.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_MATH_H
 #define CLUSTAL_OMEGA_HAVE_MATH_H 1
 #endif
 
 /* Define to 1 if you have the <memory.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_MEMORY_H
 #define CLUSTAL_OMEGA_HAVE_MEMORY_H 1
 #endif
 
 /* Define to 1 if you have the `ntohl' function. */
 #ifndef CLUSTAL_OMEGA_HAVE_NTOHL
 #define CLUSTAL_OMEGA_HAVE_NTOHL 1
 #endif
 
 /* Define to 1 if you have the `ntohs' function. */
 #ifndef CLUSTAL_OMEGA_HAVE_NTOHS
 #define CLUSTAL_OMEGA_HAVE_NTOHS 1
 #endif
 
 /* Define to 1 if you have the `ntonl' function. */
 /* #undef HAVE_NTONL */
 
 /* Define to 1 if you have the `ntons' function. */
 /* #undef HAVE_NTONS */
 
 /* Defined if OpenMP should and can be used */
 #ifndef CLUSTAL_OMEGA_HAVE_OPENMP
 #define CLUSTAL_OMEGA_HAVE_OPENMP 1
 #endif
 
 /* Define to 1 if you have the <stdarg.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_STDARG_H
 #define CLUSTAL_OMEGA_HAVE_STDARG_H 1
 #endif
 
 /* Define to 1 if you have the <stdint.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_STDINT_H
 #define CLUSTAL_OMEGA_HAVE_STDINT_H 1
 #endif
 
 /* Define to 1 if you have the <stdio.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_STDIO_H
 #define CLUSTAL_OMEGA_HAVE_STDIO_H 1
 #endif
 
 /* Define to 1 if you have the <stdlib.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_STDLIB_H
 #define CLUSTAL_OMEGA_HAVE_STDLIB_H 1
 #endif
 
 /* Define to 1 if you have the <strings.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_STRINGS_H
 #define CLUSTAL_OMEGA_HAVE_STRINGS_H 1
 #endif
 
 /* Define to 1 if you have the <string.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_STRING_H
 #define CLUSTAL_OMEGA_HAVE_STRING_H 1
 #endif
 
 /* Define to 1 if you have the `stroul' function. */
 /* #undef HAVE_STROUL */
 
 /* Define to 1 if you have the `strtoull' function. */
 #ifndef CLUSTAL_OMEGA_HAVE_STRTOULL
 #define CLUSTAL_OMEGA_HAVE_STRTOULL 1
 #endif
 
 /* Define to 1 if you have the <sys/stat.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_SYS_STAT_H
 #define CLUSTAL_OMEGA_HAVE_SYS_STAT_H 1
 #endif
 
 /* Define to 1 if you have the <sys/types.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_SYS_TYPES_H
 #define CLUSTAL_OMEGA_HAVE_SYS_TYPES_H 1
 #endif
 
 /* Define to 1 if you have the <time.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_TIME_H
 #define CLUSTAL_OMEGA_HAVE_TIME_H 1
 #endif
 
 /* Define to 1 if you have the <unistd.h> header file. */
 #ifndef CLUSTAL_OMEGA_HAVE_UNISTD_H
 #define CLUSTAL_OMEGA_HAVE_UNISTD_H 1
 #endif
 
 /* This is a LINUX system */
 #ifndef CLUSTAL_OMEGA_LINUX
 #define CLUSTAL_OMEGA_LINUX 1
 #endif
 
 /* Define to the sub-directory in which libtool stores uninstalled libraries.
    */
 #ifndef CLUSTAL_OMEGA_LT_OBJDIR
 #define CLUSTAL_OMEGA_LT_OBJDIR ".libs/"
 #endif
 
 /* This is a MinGW system */
 /* #undef MINGW */
 
 /* No-debug Mode */
 #ifndef CLUSTAL_OMEGA_NDEBUG
 #define CLUSTAL_OMEGA_NDEBUG /**/
 #endif
 
 /* Some strange OS */
 /* #undef OTHEROS */
 
 /* Name of package */
 #ifndef CLUSTAL_OMEGA_PACKAGE
 #define CLUSTAL_OMEGA_PACKAGE "clustal-omega"
 #endif
 
 /* Define to the address where bug reports for this package should be sent. */
 #ifndef CLUSTAL_OMEGA_PACKAGE_BUGREPORT
 #define CLUSTAL_OMEGA_PACKAGE_BUGREPORT "clustalw@ucd.ie"
 #endif
 
 /* The package code name */
 #ifndef CLUSTAL_OMEGA_PACKAGE_CODENAME
 #define CLUSTAL_OMEGA_PACKAGE_CODENAME "AndreaGiacomo"
 #endif
 
 /* Define to the full name of this package. */
 #ifndef CLUSTAL_OMEGA_PACKAGE_NAME
 #define CLUSTAL_OMEGA_PACKAGE_NAME "Clustal Omega"
 #endif
 
 /* Define to the full name and version of this package. */
 #ifndef CLUSTAL_OMEGA_PACKAGE_STRING
 #define CLUSTAL_OMEGA_PACKAGE_STRING "Clustal Omega 1.2.0"
 #endif
 
 /* Define to the one symbol short name of this package. */
 #ifndef CLUSTAL_OMEGA_PACKAGE_TARNAME
 #define CLUSTAL_OMEGA_PACKAGE_TARNAME "clustal-omega"
 #endif
 
 /* Define to the home page for this package. */
 #ifndef CLUSTAL_OMEGA_PACKAGE_URL
 #define CLUSTAL_OMEGA_PACKAGE_URL ""
 #endif
 
 /* Define to the version of this package. */
 #ifndef CLUSTAL_OMEGA_PACKAGE_VERSION
 #define CLUSTAL_OMEGA_PACKAGE_VERSION "1.2.0"
 #endif
 
 /* The size of `fpos_t', as computed by sizeof. */
 #ifndef CLUSTAL_OMEGA_SIZEOF_FPOS_T
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 #define CLUSTAL_OMEGA_SIZEOF_FPOS_T 16
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 #endif
 
 /* The size of `unsigned int', as computed by sizeof. */
 #ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT
 #define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT 4
 #endif
 
 /* The size of `unsigned long', as computed by sizeof. */
 #ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG
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 #define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 8
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 #endif
 
 /* The size of `unsigned long long', as computed by sizeof. */
 #ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG
 #define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG 8
 #endif
 
 /* The size of `unsigned short', as computed by sizeof. */
 #ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT
 #define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT 2
 #endif
 
 /* This is a Solaris system */
 /* #undef SOLARIS */
 
 /* This is a BSD system */
 /* #undef SOMEBSD */
 
 /* Define to 1 if you have the ANSI C header files. */
 #ifndef CLUSTAL_OMEGA_STDC_HEADERS
 #define CLUSTAL_OMEGA_STDC_HEADERS 1
 #endif
 
 /* Enable extensions on AIX 3, Interix.  */
 #ifndef _ALL_SOURCE
 # define _ALL_SOURCE 1
 #endif
 /* Enable GNU extensions on systems that have them.  */
 #ifndef _GNU_SOURCE
 # define _GNU_SOURCE 1
 #endif
 /* Enable threading extensions on Solaris.  */
 #ifndef _POSIX_PTHREAD_SEMANTICS
 # define _POSIX_PTHREAD_SEMANTICS 1
 #endif
 /* Enable extensions on HP NonStop.  */
 #ifndef _TANDEM_SOURCE
 # define _TANDEM_SOURCE 1
 #endif
 /* Enable general extensions on Solaris.  */
 #ifndef __EXTENSIONS__
 # define __EXTENSIONS__ 1
 #endif
 
 
 /* Version number of package */
 #ifndef CLUSTAL_OMEGA_VERSION
 #define CLUSTAL_OMEGA_VERSION "1.2.0"
 #endif
 
 /* Define if using the dmalloc debugging malloc package */
 /* #undef WITH_DMALLOC */
 
 /* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
    significant byte first (like Motorola and SPARC, unlike Intel). */
 #if defined AC_APPLE_UNIVERSAL_BUILD
 # if defined __BIG_ENDIAN__
 #  define WORDS_BIGENDIAN 1
 # endif
 #else
 # ifndef WORDS_BIGENDIAN
 /* #  undef WORDS_BIGENDIAN */
 # endif
 #endif
 
 /* Define to 1 if on MINIX. */
 /* #undef _MINIX */
 
 /* Define to 2 if the system does not provide POSIX.1 features except with
    this defined. */
 /* #undef _POSIX_1_SOURCE */
 
 /* Define to 1 if you need to in order for `stat' and other things to work. */
 /* #undef _POSIX_SOURCE */
 
 /* Define to empty if `const' does not conform to ANSI C. */
 /* #undef const */
 
 /* Define to `__inline__' or `__inline' if that's what the C compiler
    calls it, or to nothing if 'inline' is not supported under any name.  */
 #ifndef __cplusplus
 /* #undef inline */
 #endif
 
 /* Define to `long int' if <sys/types.h> does not define. */
 /* #undef off_t */
 
 /* Define to `unsigned int' if <sys/types.h> does not define. */
 /* #undef size_t */
  
 /* once: _SRC_CLUSTAL_OMEGA_CONFIG_H */
 #endif