src/ClustalOmega/src/Makefile.in
dafeef0b
 # Makefile.in generated by automake 1.10.2 from Makefile.am.
 # @configure_input@
 
 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
 # 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
 
 # This program is distributed in the hope that it will be useful,
 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
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 EXTRA_DIST = clustalo-api-test.c
 SUBDIRS = exceptions4c hhalign squid kmpp argtable2 clustal
 
 # the following is the clustalo convenience library which wraps all
 # the other noinst libraries
 lib_LTLIBRARIES = libclustalo.la
 libclustalo_la_SOURCES = clustal-omega.c
 libclustalo_la_LIBADD = exceptions4c/libexceptions4c.la \
 	clustal/libclustal.la \
 	hhalign/libhhalign.la \
 	squid/libsquid.la	\
 	kmpp/libkmpp.la \
 	argtable2/libargtable2.la
 
 libclustalo_la_LDFLAGS = -static
 library_includedir = $(includedir)/clustalo/
 library_include_HEADERS = clustal-omega-config.h clustal-omega.h
 clustalo_SOURCES = main.cpp \
 	mymain.c mymain.h
 
 clustalo_LDADD = libclustalo.la
 all: config.h
 	$(MAKE) $(AM_MAKEFLAGS) all-recursive
 
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 	  rm -f stamp-h1; \
 	  $(MAKE) $(AM_MAKEFLAGS) stamp-h1; \
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 clean-libLTLIBRARIES:
 	-test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES)
 	@list='$(lib_LTLIBRARIES)'; for p in $$list; do \
 	  dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
 	  test "$$dir" != "$$p" || dir=.; \
 	  echo "rm -f \"$${dir}/so_locations\""; \
 	  rm -f "$${dir}/so_locations"; \
 	done
 libclustalo.la: $(libclustalo_la_OBJECTS) $(libclustalo_la_DEPENDENCIES) 
 	$(libclustalo_la_LINK) -rpath $(libdir) $(libclustalo_la_OBJECTS) $(libclustalo_la_LIBADD) $(LIBS)
 install-binPROGRAMS: $(bin_PROGRAMS)
 	@$(NORMAL_INSTALL)
 	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
 	@list='$(bin_PROGRAMS)'; for p in $$list; do \
 	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
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 	     || test -f $$p1 \
 	  ; then \
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 	  else :; fi; \
 	done
 
 uninstall-binPROGRAMS:
 	@$(NORMAL_UNINSTALL)
 	@list='$(bin_PROGRAMS)'; for p in $$list; do \
 	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
 	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
 	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
 	done
 
 clean-binPROGRAMS:
 	@list='$(bin_PROGRAMS)'; for p in $$list; do \
 	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
 	  echo " rm -f $$p $$f"; \
 	  rm -f $$p $$f ; \
 	done
 clustalo$(EXEEXT): $(clustalo_OBJECTS) $(clustalo_DEPENDENCIES) 
 	@rm -f clustalo$(EXEEXT)
 	$(CXXLINK) $(clustalo_OBJECTS) $(clustalo_LDADD) $(LIBS)
 
 mostlyclean-compile:
 	-rm -f *.$(OBJEXT)
 
 distclean-compile:
 	-rm -f *.tab.c
 
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/clustal-omega.Plo@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/main.Po@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/mymain.Po@am__quote@
 
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 @am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
 @am__fastdepCC_TRUE@	mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
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 @am__fastdepCC_TRUE@	$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
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 @am__fastdepCXX_TRUE@	$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
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 @am__fastdepCXX_FALSE@	$(LTCXXCOMPILE) -c -o $@ $<
 
 mostlyclean-libtool:
 	-rm -f *.lo
 
 clean-libtool:
 	-rm -rf .libs _libs
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 	@$(NORMAL_INSTALL)
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 	@$(NORMAL_UNINSTALL)
 	@list='$(library_include_HEADERS)'; for p in $$list; do \
 	  f=$(am__strip_dir) \
 	  echo " rm -f '$(DESTDIR)$(library_includedir)/$$f'"; \
 	  rm -f "$(DESTDIR)$(library_includedir)/$$f"; \
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 # This directory's subdirectories are mostly independent; you can cd
 # into them and run `make' without going through this Makefile.
 # To change the values of `make' variables: instead of editing Makefiles,
 # (1) if the variable is set in `config.status', edit `config.status'
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 	done && test -z "$$fail"
 tags-recursive:
 	list='$(SUBDIRS)'; for subdir in $$list; do \
 	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
 	done
 ctags-recursive:
 	list='$(SUBDIRS)'; for subdir in $$list; do \
 	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
 	done
 
 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
 	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
 	unique=`for i in $$list; do \
 	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 	  done | \
 	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 	      END { if (nonempty) { for (i in files) print i; }; }'`; \
 	mkid -fID $$unique
 tags: TAGS
 
 TAGS: tags-recursive $(HEADERS) $(SOURCES) config.h.in $(TAGS_DEPENDENCIES) \
 		$(TAGS_FILES) $(LISP)
 	tags=; \
 	here=`pwd`; \
 	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
 	  include_option=--etags-include; \
 	  empty_fix=.; \
 	else \
 	  include_option=--include; \
 	  empty_fix=; \
 	fi; \
 	list='$(SUBDIRS)'; for subdir in $$list; do \
 	  if test "$$subdir" = .; then :; else \
 	    test ! -f $$subdir/TAGS || \
 	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
 	  fi; \
 	done; \
 	list='$(SOURCES) $(HEADERS) config.h.in $(LISP) $(TAGS_FILES)'; \
 	unique=`for i in $$list; do \
 	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 	  done | \
 	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 	      END { if (nonempty) { for (i in files) print i; }; }'`; \
 	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
 	  test -n "$$unique" || unique=$$empty_fix; \
 	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
 	    $$tags $$unique; \
 	fi
 ctags: CTAGS
 CTAGS: ctags-recursive $(HEADERS) $(SOURCES) config.h.in $(TAGS_DEPENDENCIES) \
 		$(TAGS_FILES) $(LISP)
 	tags=; \
 	list='$(SOURCES) $(HEADERS) config.h.in $(LISP) $(TAGS_FILES)'; \
 	unique=`for i in $$list; do \
 	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 	  done | \
 	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 	      END { if (nonempty) { for (i in files) print i; }; }'`; \
 	test -z "$(CTAGS_ARGS)$$tags$$unique" \
 	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
 	     $$tags $$unique
 
 GTAGS:
 	here=`$(am__cd) $(top_builddir) && pwd` \
 	  && cd $(top_srcdir) \
 	  && gtags -i $(GTAGS_ARGS) $$here
 
 distclean-tags:
 	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
 
 distdir: $(DISTFILES)
 	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 	list='$(DISTFILES)'; \
 	  dist_files=`for file in $$list; do echo $$file; done | \
 	  sed -e "s|^$$srcdirstrip/||;t" \
 	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
 	case $$dist_files in \
 	  */*) $(MKDIR_P) `echo "$$dist_files" | \
 			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
 			   sort -u` ;; \
 	esac; \
 	for file in $$dist_files; do \
 	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
 	  if test -d $$d/$$file; then \
 	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
 	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
 	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
 	    fi; \
 	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
 	  else \
 	    test -f $(distdir)/$$file \
 	    || cp -p $$d/$$file $(distdir)/$$file \
 	    || exit 1; \
 	  fi; \
 	done
 	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
 	  if test "$$subdir" = .; then :; else \
 	    test -d "$(distdir)/$$subdir" \
 	    || $(MKDIR_P) "$(distdir)/$$subdir" \
 	    || exit 1; \
 	    distdir=`$(am__cd) $(distdir) && pwd`; \
 	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
 	    (cd $$subdir && \
 	      $(MAKE) $(AM_MAKEFLAGS) \
 	        top_distdir="$$top_distdir" \
 	        distdir="$$distdir/$$subdir" \
 		am__remove_distdir=: \
 		am__skip_length_check=: \
 	        distdir) \
 	      || exit 1; \
 	  fi; \
 	done
 check-am: all-am
 check: check-recursive
 all-am: Makefile $(LTLIBRARIES) $(PROGRAMS) $(HEADERS) config.h
 install-binPROGRAMS: install-libLTLIBRARIES
 
 installdirs: installdirs-recursive
 installdirs-am:
 	for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" "$(DESTDIR)$(library_includedir)"; do \
 	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
 	done
 install: install-recursive
 install-exec: install-exec-recursive
 install-data: install-data-recursive
 uninstall: uninstall-recursive
 
 install-am: all-am
 	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
 
 installcheck: installcheck-recursive
 install-strip:
 	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
 	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
 	  `test -z '$(STRIP)' || \
 	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
 mostlyclean-generic:
 
 clean-generic:
 
 distclean-generic:
 	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
 	@echo "it deletes files that may require special tools to rebuild."
 clean: clean-recursive
 
 clean-am: clean-binPROGRAMS clean-generic clean-libLTLIBRARIES \
 	clean-libtool mostlyclean-am
 
 distclean: distclean-recursive
 	-rm -rf ./$(DEPDIR)
 	-rm -f Makefile
 distclean-am: clean-am distclean-compile distclean-generic \
 	distclean-hdr distclean-tags
 
 dvi: dvi-recursive
 
 dvi-am:
 
 html: html-recursive
 
 info: info-recursive
 
 info-am:
 
 install-data-am: install-library_includeHEADERS
 
 install-dvi: install-dvi-recursive
 
 install-exec-am: install-binPROGRAMS install-libLTLIBRARIES
 
 install-html: install-html-recursive
 
 install-info: install-info-recursive
 
 install-man:
 
 install-pdf: install-pdf-recursive
 
 install-ps: install-ps-recursive
 
 installcheck-am:
 
 maintainer-clean: maintainer-clean-recursive
 	-rm -rf ./$(DEPDIR)
 	-rm -f Makefile
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
 mostlyclean: mostlyclean-recursive
 
 mostlyclean-am: mostlyclean-compile mostlyclean-generic \
 	mostlyclean-libtool
 
 pdf: pdf-recursive
 
 pdf-am:
 
 ps: ps-recursive
 
 ps-am:
 
 uninstall-am: uninstall-binPROGRAMS uninstall-libLTLIBRARIES \
 	uninstall-library_includeHEADERS
 
 .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
 	install-strip
 
 .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
 	all all-am check check-am clean clean-binPROGRAMS \
 	clean-generic clean-libLTLIBRARIES clean-libtool ctags \
 	ctags-recursive distclean distclean-compile distclean-generic \
 	distclean-hdr distclean-libtool distclean-tags distdir dvi \
 	dvi-am html html-am info info-am install install-am \
 	install-binPROGRAMS install-data install-data-am install-dvi \
 	install-dvi-am install-exec install-exec-am install-html \
 	install-html-am install-info install-info-am \
 	install-libLTLIBRARIES install-library_includeHEADERS \
 	install-man install-pdf install-pdf-am install-ps \
 	install-ps-am install-strip installcheck installcheck-am \
 	installdirs installdirs-am maintainer-clean \
 	maintainer-clean-generic mostlyclean mostlyclean-compile \
 	mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
 	tags tags-recursive uninstall uninstall-am \
 	uninstall-binPROGRAMS uninstall-libLTLIBRARIES \
 	uninstall-library_includeHEADERS
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.
 .NOEXPORT: