EXTRA_DIST = clustalo-api-test.c
 
 SUBDIRS = hhalign squid kmpp argtable2 clustal
 
 AM_LDFLAGS = @AM_LDFLAGS@
 AM_CXXFLAGS = -fPIC @AM_CXXFLAGS@ @OPENMP_CXXFLAGS@
 AM_CFLAGS = -fPIC @AM_CFLAGS@ @OPENMP_CFLAGS@
 
 
 # the following is the clustalo convenience library which wraps all
 # the other noinst libraries
 
 lib_LTLIBRARIES = libclustalo.la
 
 libclustalo_la_SOURCES = clustal-omega.c
 libclustalo_la_LIBADD = exceptions4c/libexceptions4c.la \
 	../../gc-7.2/libgc.la \
 	../../gc-7.2/libgccpp.la \
 	clustal/libclustal.la \
 	hhalign/libhhalign.la \
 	squid/libsquid.la	\
 	kmpp/libkmpp.la \
     argtable2/libargtable2.la
 libclustalo_la_LDFLAGS = -static
 library_includedir=$(includedir)/clustalo/
 library_include_HEADERS = clustal-omega-config.h clustal-omega.h
 
 
 
 bin_PROGRAMS = clustalo
 
 clustalo_SOURCES =  main.cpp \
 	mymain.c mymain.h
 
 clustalo_LDADD = libclustalo.la
 clustalo_CFLAGS = -fPIC