%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %%%%%                                                                      %%%%%
 %%%%%            Ciliate macronuclear genetic code definitions             %%%%%
 %%%%%                                                                      %%%%%
 %%%%%    Only exchanges compared to the standard code must be defined.     %%%%%
 %%%%%                                                                      %%%%%
 %%%%%      (The last codon of the list is used for backtranslations        %%%%%
 %%%%%       from protein to DNA sequences---therefore the wobbles)         %%%%%
 %%%%%                                                                      %%%%%
 %%%%%                                                                      %%%%%
 %%%%%    Activate these definitions for your alignment by the following    %%%%%
 %%%%%    command in the texshade environment:                              %%%%%
 %%%%%                                                                      %%%%%
 %%%%%                         \geneticcode{ciliate}                        %%%%%
 %%%%%                                                                      %%%%%
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
 \codon{Q}{TAA,TAG,UAA,UAG,YAR}