# Generated by roxygen2: do not edit by hand

export(matchMotifs)
export(match_motifs)
export(motifCounts)
export(motifMatches)
export(motifScores)
export(motif_counts)
export(motif_matches)
export(motif_scores)
export(pwmType)
exportMethods(matchMotifs)
exportMethods(motifCounts)
exportMethods(motifMatches)
exportMethods(motifScores)
import(BSgenome)
import(Matrix)
import(SummarizedExperiment)
import(methods)
importClassesFrom(Biostrings,DNAString)
importClassesFrom(Biostrings,DNAStringSet)
importClassesFrom(GenomicRanges,GenomicRanges)
importClassesFrom(TFBSTools,PFMatrix)
importClassesFrom(TFBSTools,PFMatrixList)
importClassesFrom(TFBSTools,PWMatrix)
importClassesFrom(TFBSTools,PWMatrixList)
importFrom(BSgenome,getBSgenome)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,getSeq)
importFrom(Biostrings,letterFrequency)
importFrom(GenomeInfoDb,genome)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(IRanges,IRanges)
importFrom(IRanges,IRangesList)
importFrom(Rcpp,sourceCpp)
importFrom(Rsamtools,scanFa)
importFrom(Rsamtools,scanFaIndex)
importFrom(S4Vectors,DataFrame)
importFrom(TFBSTools,PWMatrixList)
importFrom(TFBSTools,bg)
importFrom(TFBSTools,name)
importFrom(TFBSTools,toPWM)
importMethodsFrom(GenomicRanges,seqnames)
importMethodsFrom(GenomicRanges,start)
importMethodsFrom(TFBSTools,as.matrix)
useDynLib(motifmatchr, .registration = TRUE)