# mosdef <!-- badges: start --> [](https://github.com/imbeimainz/mosdef/actions/workflows/R-CMD-check.yaml) <!-- badges: end --> The goal of `mosdef` is to provides functionality to run a number of tasks in the differential expression analysis workflow. This encompasses the most widely used steps, from running various enrichment analysis tools with a unified interface to creating plots and beautifying table components linking to external websites and databases. This streamlines the generation of comprehensive analysis reports. `mosdef` can be found on Bioconductor (<https://www.bioconductor.org/packages/mosdef>). ## Installation You can install the version of `mosdef` which is on Bioconductor with these commands: ``` r if (!require("BiocManager")) { install.packages("BiocManager") } BiocManager::install("mosdef") ``` Alternatively, you can install the development version of `mosdef` from GitHub with: ``` r library("remotes") remotes::install_github("imbeimainz/mosdef", dependencies = TRUE, build_vignettes = TRUE) ``` ## Usage overview You can find the rendered version of the documentation of `mosdef` at the project website <https://imbeimainz.github.io/mosdef>, created with `pkgdown`. ## Development If you encounter a bug, have usage questions, or want to share ideas and functionality to make this package better, feel free to file an [issue](https://github.com/imbeimainz/mosdef/issues). ## Code of Conduct Please note that the mosdef project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms. ## License MIT