# mia - Microbiome analysis <img src="man/figures/mia_logo.png" align="right" width="120" />
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## Using the package
This project provides functions and workflows examples for analyses
of microbiome data. The main class for working with microbiome data in this
package is `TreeSummarizedExperiment`.
For examples of functionality, see the [function reference page](https://microbiome.github.io/mia/reference/index.html).
More information and example workflows are provided in the online
manual [Orchestrating Microbiome Analysis with
Bioconductor](https://microbiome.github.io/OMA).
## Installation
### Bioc-release
```
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mia")
```
### Bioc-devel
```
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("mia")
```
## Contributing
Contributions are welcome in the form of feedback, issues, pull
requests etc, see [contributor guidelines](CONTRIBUTING.md).
## Code of conduct
Please note that the mia project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html).
By contributing to this project, you agree to abide by its terms.
