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DESCRIPTION 100644 1 kb
NAMESPACE 100644 0 kb
README.md 100644 3 kb
appveyor.yml 100644 1 kb
README.md
----------------------------------------------------------- # miRBaseConverter [![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/taoshengxu/miRBaseConverter?branch=master&svg=true)](https://ci.appveyor.com/project/taoshengxu/miRBaseConverter) [![bioc](http://www.bioconductor.org/shields/downloads/miRBaseConverter.svg)](http://bioconductor.org/packages/stats/bioc/miRBaseConverter.html) [![bioc](http://www.bioconductor.org/shields/years-in-bioc/miRBaseConverter.svg)](http://bioconductor.org/packages/miRBaseConverter/) [![bioc](http://bioconductor.org/shields/availability/3.6/miRBaseConverter.svg)](http://bioconductor.org/packages/miRBaseConverter/) [![bioc](http://www.bioconductor.org/shields/build/devel/bioc/miRBaseConverter.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/miRBaseConverter.html) `miRBaseConverter` is an R/Bioconductor package for converting and retrieving the definition of miRNAs ( Names, Accessions, Sequences, Families and others) in different miRBase versions ( From miRBase version 6 to version 22 [ The latest version ] ). A tiny built-in database is embedded in the `miRBaseConverter` R package for retrieving miRNA information efficiently. ------------------------------------------------------ ## Installing miRBaseConverter ```{r,eval=FALSE,warning=FALSE,message=FALSE} devtools::install_github("taoshengxu/miRBaseConverter") ``` ----------------------------------------------------------------- ## Manual The tutorial and examples of `miRBaseConverter` pacakge can be found [here](https://bioconductor.org/packages/devel/bioc/vignettes/miRBaseConverter/inst/doc/miRBaseConverter-vignette.html). ## Shiny application The online application with interactive interface of this package can be accessed in [http://nugget.unisa.edu.au:3838/miRBaseConverter](http://nugget.unisa.edu.au:3838/miRBaseConverter) or [https://taoshengxu.shinyapps.io/miRBaseConverter/](https://taoshengxu.shinyapps.io/miRBaseConverter/). ------------------------------------------------------------------------ ## Citation Please cite the following article when using `miRBaseConverter`: [![doi](https://img.shields.io/badge/doi.org/10.1186/s12859-018-2531-5-green.svg?style=flat)]( https://doi.org/10.1186/s12859-018-2531-5) [![citation](https://img.shields.io/badge/cited%20by-10-green.svg?style=flat)](https://doi.org/10.1093/bioinformatics/btx378) Taosheng Xu, Ning Su, Lin Liu, Junpeng Zhang, Hongqiang Wang, Weijia Zhang, Jie Gui, Kui Yu, Jiuyong Li and Thuc Duy Le. miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRBase. BMC Bioinformatics 19 (Suppl 19) :514. doi: https://doi.org/10.1186/s12859-018-2531-5