Package: methylPipe
Type: Package
Title: Base resolution DNA methylation data analysis
Version: 1.12.0
Date: 2016-03-16
Author: Kamal Kishore
Maintainer: Kamal Kishore <>
Description: Memory efficient analysis of base resolution DNA methylation data in both 
  the CpG and non-CpG sequence context. Integration of DNA methylation data derived from 
  any methodology providing base- or low-resolution data.
License: GPL(>=2)
LazyLoad: yes
Imports: marray, gplots, IRanges, BiocGenerics, Gviz, GenomicAlignments, Biostrings,
  parallel, data.table, GenomeInfoDb, S4Vectors
Depends: R (>= 3.2.0), methods, grDevices, graphics, stats, utils, GenomicRanges, SummarizedExperiment (>= 0.2.0), Rsamtools 
Suggests: BSgenome.Hsapiens.UCSC.hg18,
        TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR
VignetteBuilder: knitr
biocViews: MethylSeq, DNAMethylation, Coverage, Sequencing