Bioconductor Code: methylInheritance

Graph of methylInheritance

352fa30 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:56:57 -0400;
a5e1dc0 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:56:57 -0400;
943d9f7 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:53:51 -0400;
4c831cb (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:53:51 -0400;
4002def bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:34 -0400;
e34c4cc (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:34 -0400;
bb91e6b bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:40:28 +0000;
8a86ab8 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:40:28 +0000;
1683f01 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:33:06 -0500;
006bb9b bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:34:47 +0000;
0387c10 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:34:47 +0000;
8d56889 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:27:23 +0000;
0c4894a (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:27:23 +0000;
8537c71 Update package to version 1.15.1 by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 23:22:23 -0400;
29da895 Merge remote-tracking branch 'upstream/master' by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 20:13:06 -0400;
985fca8 Change class() for is() and T/F to TRUE/FALSE in test units by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 19:26:07 -0400;
480c241 Change 1:... to seq_len() by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 17:54:29 -0400;
e6e22c8 Run roxygenise() by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 17:11:02 -0400;
c476def Use bioc-release with travis by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 15:47:47 -0400;
2e7dc1f Correct bug in loadConvergenceData() when permutation files and observation file are in separated directories by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 15:34:01 -0400;
976175d New demo permutation/observation files in two different sub-directories by Astrid Deschenes <adeschen@hotmail.com> 2021-04-06 15:31:37 -0400;
97f8995 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:23:43 -0400;
ef7dbdb (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:23:43 -0400;
75d5d67 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:07:16 +0000;
1034a83 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:07:16 +0000;
f22c734 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:19 -0400;
6822d45 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:24 -0400;
f1eeeca bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:14:48 -0400;
3440afc (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:07 -0400;
8560c11 Update release version to 1.7.2 by adeschen <adeschen@hotmail.com> 2019-04-02 15:29:24 -0400;
a36360c Update unit test to fit new version of methylKit by adeschen <adeschen@hotmail.com> 2019-04-02 14:57:41 -0400;
0e5ea1e Add license badge by Astrid Deschenes <adeschen@users.noreply.github.com> 2018-12-05 14:50:44 -0500;
61ee108 (origin/RELEASE_3_8, RELEASE_3_8) Update release version to 1.6.1 by adeschen <adeschen@hotmail.com> 2018-12-03 18:53:11 -0500;
1821582 Adding ImmunoOncology to biocViews by adeschen <adeschen@hotmail.com> 2018-11-29 22:48:48 -0500;
35cad3f Update vignette so every section run by adeschen <adeschen@hotmail.com> 2018-11-29 19:34:38 -0500;
9abe3d4 Update version to 1.7.1 by adeschen <adeschen@hotmail.com> 2018-11-30 11:57:33 -0500;
8862ccc Adding ImmunoOncology to biocViews by adeschen <adeschen@hotmail.com> 2018-11-29 22:48:48 -0500;
219bf63 Update vignette so every section run by adeschen <adeschen@hotmail.com> 2018-11-29 19:34:38 -0500;
27085af bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:37 -0400;
54709a0 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:04 -0400;
938b9ce Update version to 1.5.2 by adeschen <adeschen@hotmail.com> 2018-09-28 20:59:59 -0400;
c7fcdc1 Update package description by adeschen <adeschen@hotmail.com> 2018-09-28 20:32:03 -0400;
3ae4f7c Update version and news file by adeschen <adeschen@hotmail.com> 2018-09-28 20:24:09 -0400;
a866c6f Update CITATION file by adeschen <adeschen@hotmail.com> 2018-08-21 20:01:18 -0400;
d97c3ce Update man page with latest roxygen2 by adeschen <adeschen@hotmail.com> 2018-08-21 20:00:55 -0400;
ba2db05 Update citing section in vignette by adeschen <adeschen@hotmail.com> 2018-08-21 19:59:04 -0400;
3ee796e Update citing section of README by adeschen <adeschen@hotmail.com> 2018-08-21 17:08:23 -0400;
6a512fa Update readme file by adeschen <adeschen@hotmail.com> 2018-08-07 19:29:55 -0400;
728d510 Adding CITATION file by adeschen <adeschen@hotmail.com> 2018-07-20 19:23:11 -0400;
c392039 Remove README file by adeschen <adeschen@hotmail.com> 2018-07-18 14:13:23 -0400;
18e9522 Update README by adeschen <adeschen@hotmail.com> 2018-07-17 21:43:38 -0400;
3706eda Merge remote-tracking branch 'upstream/master' by adeschen <adeschen@hotmail.com> 2018-07-17 21:01:43 -0400;
ba941c6 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
cf3b4e9 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:46 -0400;
99a0dd5 Update README file by adeschen <adeschen@hotmail.com> 2018-03-25 01:33:07 -0400;
82dec2d Updating version to 1.3.2 by adeschen <adeschen@hotmail.com> 2018-03-25 00:11:21 -0400;
9a3ac22 Adding README text file by adeschen <adeschen@hotmail.com> 2018-03-24 23:52:29 -0400;
19774e8 Merge branch 'master' of https://github.com/adeschen/methylInheritance by adeschen <adeschen@hotmail.com> 2018-03-24 23:30:47 -0400;
777ea0c Update README.md by Astrid Deschenes <adeschen@users.noreply.github.com> 2018-03-22 16:58:22 -0400;
3056e3e Update to version 1.3.1 by adeschen <adeschen@hotmail.com> 2018-02-25 21:07:46 -0500;
4575dca Update .travis.yml by Astrid Deschenes <adeschen@users.noreply.github.com> 2018-02-25 19:35:52 -0500;
3804614 Update unit tests that were failing due to modifications in Bioconductor by adeschen <adeschen@hotmail.com> 2018-02-23 19:23:58 -0500;
717cd4e bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:31 -0400;
afeb6cc (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:27 -0400;
79fb3f8 Add URL and BugReport to DESCRIPTION. Update version. by adeschen <adeschen@hotmail.com> 2017-10-13 21:16:17 -0400;
0e2c584 Update version to 1.1.3 by adeschen <adeschen@hotmail.com> 2017-10-13 15:22:31 -0400;
aba0ca6 Update .travis.yml by Astrid Deschenes <adeschen@users.noreply.github.com> 2017-10-13 14:55:23 -0400;
423ee94 Update documentation. Add unit tests. by adeschen <adeschen@hotmail.com> 2017-10-13 11:38:01 -0400;
fae5465 Update .travis.yml by Astrid Deschenes <adeschen@users.noreply.github.com> 2017-10-13 09:51:49 -0400;
6c99488 Update .travis.yml by Astrid Deschenes <adeschen@users.noreply.github.com> 2017-10-13 09:48:54 -0400;
b83cd5a Adding unit test for runPermutation by adeschen <adeschen@hotmail.com> 2017-10-13 09:12:54 -0400;
c3fd20d Update version by adeschen <adeschen@hotmail.com> 2017-10-12 23:47:25 -0400;
018fdaf Update doc for runObservation() and runPermutation() by adeschen <adeschen@hotmail.com> 2017-10-12 23:32:52 -0400;
8c1ea24 Updating documentation related to methods by adeschen <adeschen@hotmail.com> 2017-10-12 21:40:47 -0400;
4fc1dc2 Update name of methInheritSim package and add it to the description file by adeschen <adeschen@hotmail.com> 2017-10-12 18:48:04 -0400;
fed658b Update NEWS and package version by adeschen <adeschen@hotmail.com> 2017-10-12 14:17:48 -0400;
9c516d2 Remove messages generated by methylKit. Update documentation. by adeschen <adeschen@hotmail.com> 2017-10-12 13:32:04 -0400;
2986110 Changing code to fit the new output of runObservation() and runPermutation(). The outputDir parameter is now mandatory by adeschen <adeschen@hotmail.com> 2017-10-12 00:10:55 -0400;
27fd8fb Validating that DME analysis has been processed on data before saving results per generation to avoid replacing a good file with an empty file when process has been restarted. by adeschen <adeschen@hotmail.com> 2017-10-10 21:03:31 -0400;
4fdd2ab Merge branch 'master' of https://github.com/adeschen/methylInheritance into parallelUpdate by adeschen <adeschen@hotmail.com> 2017-10-09 15:34:33 -0400;
9557f16 Update README.md by Astrid Deschenes <adeschen@users.noreply.github.com> 2017-10-03 10:53:53 -0400;
d131144 Adding Bioconductor section to README by adeschen <adeschen@hotmail.com> 2017-10-03 10:42:38 -0400;
c1b3f17 Fixed conflicts in version change. by adeschen <adeschen@hotmail.com> 2017-10-02 23:45:46 -0400;
795c4f5 Adding unit tests for interGeneration() function by adeschen <adeschen@hotmail.com> 2017-05-15 17:10:52 -0400;
aa024a6 Adding unit test by adeschen <adeschen@hotmail.com> 2017-05-12 17:27:24 -0400;
b758b69 Adding unit test by adeschen <adeschen@hotmail.com> 2017-05-12 08:50:07 -0400;
cbfd01a Adding unit tests by adeschen <adeschen@hotmail.com> 2017-05-11 23:47:18 -0400;
d41f7e1 Adding unit tests by adeschen <adeschen@hotmail.com> 2017-05-11 01:46:36 -0400;
16ecbb3 Adding unit tests. Cleaning code of plotConvergenceGraph(). by adeschen <adeschen@hotmail.com> 2017-05-10 16:52:47 -0400;
530bcb5 Update convergence functions by adeschen <adeschen@hotmail.com> 2017-05-10 01:28:37 -0400;
a8176bb Correction in plotConvergence() by adeschen <adeschen@hotmail.com> 2017-05-08 19:04:40 -0400;
9dad395 Merge by adeschen <adeschen@hotmail.com> 2017-05-08 17:23:18 -0400;
45f6d7e Adding plotConvergence() function by adeschen <adeschen@hotmail.com> 2017-05-08 17:00:27 -0400;
65e67e5 Correction in acknowledgment by adeschen <adeschen@hotmail.com> 2017-05-08 16:53:52 -0400;
854f667 Split by nbre of cores by adeschen <adeschen@hotmail.com> 2017-04-27 19:34:34 -0400;
92eabbf bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
c3231c6 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
d29efc0 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
3155a8c Temporary remove output by adeschen <adeschen@hotmail.com> 2017-04-23 21:08:16 -0400;
c9be540 Change to mclapply by adeschen <adeschen@hotmail.com> 2017-04-23 15:27:49 -0400;