Package: methylInheritance
Version: 1.27.0
Date: 2021-11-21
Title: Permutation-Based Analysis associating Conserved Differentially 
        Methylated Elements Across Multiple Generations to a Treatment Effect
Description: Permutation analysis, based on Monte Carlo sampling, for
        testing the hypothesis that the number of conserved
        differentially methylated elements, between several
        generations, is associated to an effect inherited from a
        treatment and that stochastic effect can be dismissed.
Authors@R: c(person("Astrid", "Deschênes", email="",
        role=c("cre","aut"), comment = c(ORCID = "0000-0001-7846-6749")), 
        person("Pascal", "Belleau", email="", 
        role=c("aut"), comment = c(ORCID = "0000-0002-0802-1071")),
        person("Arnaud", "Droit",
        email="", role=c("aut")))
Depends: R (>= 3.5)
Imports: methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors,
        methods, parallel, ggplot2, gridExtra, rebus
Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim
Encoding: UTF-8
License: Artistic-2.0
VignetteBuilder: knitr
biocViews: BiologicalQuestion, Epigenetics, DNAMethylation,
        DifferentialMethylation, MethylSeq, Software, ImmunoOncology,
        StatisticalMethod, WholeGenome, Sequencing
RoxygenNote: 7.1.1