Graph ofmetagenomeSeq
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  • 0bc04c2 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:14:17 +0000;
  • 50be9db (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:14:17 +0000;
  • 82b26aa bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:07:35 +0000;
  • 682fd7a (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:07:35 +0000;
  • ee523c6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:58:25 +0000;
  • ff2f710 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:58:25 +0000;
  • e8a7cf0 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:50:08 -0400;
  • 22ffea0 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:50:08 -0400;
  • 0a0615e bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:34:03 +0000;
  • 7a6db6b (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:34:03 +0000;
  • 690e3b3 version bump v1.29.4 by hcorrada <hcorrada@gmail.com> 2020-03-24 15:29:11 -0400;
  • 52ddd64 deal with ihw definition note by hcorrada <hcorrada@gmail.com> 2020-03-24 15:27:58 -0400;
  • 82f94ff deal with warnings from documentation by hcorrada <hcorrada@gmail.com> 2020-03-24 15:05:29 -0400;
  • d64cfb2 version bump v1.29.3 by hcorrada <hcorrada@gmail.com> 2020-03-17 13:43:00 -0400;
  • d65d1ba fix class check not valid with R 4.0.0 by hcorrada <hcorrada@gmail.com> 2020-03-17 13:42:20 -0400;
  • fb84413 update 'returnAppropriateObj' checks for 'matrix' class with equality which is no longer appropriate in R4.0.0 by hcorrada <hcorrada@gmail.com> 2020-03-17 12:37:47 -0400;
  • c5d1145 update 'plotClassTimeSeries' to explicitly set class column as a factor. Fixes error in 'fitTimeSeries' vignette by hcorrada <hcorrada@gmail.com> 2020-03-17 12:23:38 -0400;
  • 679f8af update man pages from Roxygen by hcorrada <hcorrada@gmail.com> 2020-03-17 11:54:43 -0400;
  • 8bb0133 add the Dockerfile by hcorrada <hcorrada@gmail.com> 2020-03-16 13:56:06 -0400;
  • 341833c version bump v1.29.2 by hcorrada <hcorrada@gmail.com> 2020-02-02 23:14:42 -0500;
  • 98393f2 fix citation file by hcorrada <hcorrada@gmail.com> 2020-02-02 23:10:15 -0500;
  • 9c1b1a3 (origin/RELEASE_3_10) version bump v1.28.2 by hcorrada <hcorrada@gmail.com> 2020-02-02 23:10:36 -0500;
  • aff9e94 fix citation file by hcorrada <hcorrada@gmail.com> 2020-02-02 23:10:15 -0500;
  • 086333a version bump v1.28.1 by hcorrada <hcorrada@gmail.com> 2019-10-31 16:21:55 -0400;
  • e9959ed version bump v1.29.1 by hcorrada <hcorrada@gmail.com> 2019-10-31 15:57:21 -0400;
  • b2376c9 check for IHW by hcorrada <hcorrada@gmail.com> 2019-10-31 15:50:20 -0400;
  • a6d51e9 move ihw to suggests by hcorrada <hcorrada@gmail.com> 2019-10-31 14:54:28 -0400;
  • d538ffa bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:48 -0400;
  • b241e6e bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:38 -0400;
  • d6068e4 version bump v1.27.3 by hcorrada <hcorrada@gmail.com> 2019-08-04 12:55:06 -0400;
  • 4b276af update 'MRfulltable' to 'obj' being of result class by hcorrada <hcorrada@gmail.com> 2019-08-04 12:34:19 -0400;
  • 8de127d (origin/RELEASE_3_9, RELEASE_3_9) version bump v1.26.3 by hcorrada <hcorrada@gmail.com> 2019-08-04 12:53:02 -0400;
  • ba9a54d update 'MRfulltable' to 'obj' being of result class by hcorrada <hcorrada@gmail.com> 2019-08-04 12:34:19 -0400;
  • af3502a version bump v1.27.2 by hcorrada <hcorrada@gmail.com> 2019-07-12 13:40:56 -0400;
  • a795c30 changed `$` operator to `@` to access slots of fitZigResults object by Domenick Braccia <dbraccia@umd.edu> 2019-07-12 13:24:05 -0400;
  • ca79233 version bump v1.26.2 by hcorrada <hcorrada@gmail.com> 2019-07-12 13:33:01 -0400;
  • e1abb02 Merge branch 'RELEASE_3_9' of https://github.com/HCBravoLab/metagenomeSeq into RELEASE_3_9 by Domenick Braccia <dbraccia@umd.edu> 2019-07-12 13:25:05 -0400;
  • 060a7bf changed `$` operator to `@` to access slots of fitZigResults object by Domenick Braccia <dbraccia@umd.edu> 2019-07-12 13:24:05 -0400;
  • 2312fbd Merge branch 'RELEASE_3_9' of https://github.com/HCBravoLab/metagenomeSeq into RELEASE_3_9 by hcorrada <hcorrada@gmail.com> 2019-07-11 16:28:53 -0400;
  • 17ff96e version bump v1.26.1 by hcorrada <hcorrada@gmail.com> 2019-07-11 16:28:14 -0400;
  • addc70e version bump v1.27.1 by hcorrada <hcorrada@gmail.com> 2019-07-11 16:27:02 -0400;
  • 5ac0c73 Updated NEWS file for version 1.25.xx (2019) by Domenick Braccia <dbraccia@umd.edu> 2019-07-11 15:27:48 -0400;
  • 954307a Updated Authors in DESCRIPTION file by Domenick Braccia <dbraccia@umd.edu> 2019-07-11 16:08:14 -0400;
  • 6bc7639 Updated NEWS file for version 1.25.xx (2019) by Domenick Braccia <dbraccia@umd.edu> 2019-07-11 15:27:48 -0400;
  • 0a841a5 Merge remote-tracking branch 'origin/master' by hcorrada <hcorrada@gmail.com> 2019-07-11 11:01:38 -0400;
  • b09227a bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:21 -0400;
  • 40fa56c bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:42 -0400;
  • b550dab add fortran by Jayaram Kancherla <jayaram.kancherla@gmail.com> 2019-04-22 18:18:26 +0000;
  • f37317d Merge branch 'doms-bioc' by hcorrada <hcorrada@gmail.com> 2019-04-22 13:45:55 -0400;
  • 16c7c4e version bump v1.25.5 by hcorrada <hcorrada@gmail.com> 2019-04-22 13:45:11 -0400;
  • 4fc3224 fixed bugs in previous commit by Domenick Braccia <dbraccia@umd.edu> 2019-04-20 11:50:19 -0400;
  • 5e16476 added "ihw" as pvalue adjustment method in MRcoefs by Domenick Braccia <dbraccia@umd.edu> 2019-04-19 19:54:14 -0400;
  • a360eda made various changes: by Domenick Braccia <dbraccia@umd.edu> 2019-04-19 19:47:21 -0400;
  • 244f3b3 Merge pull request <a href="#1">#1</a> from HCBravoLab/master by Domenick J. Braccia <domenick.braccia@gmail.com> 2019-04-18 08:45:54 -0400;
  • 867f3df version bump v1.25.4 by hcorrada <hcorrada@gmail.com> 2019-04-10 14:01:06 -0400;
  • acf1381 set seed value by Jayaram Kancherla <jayaram.kancherla@gmail.com> 2019-04-04 19:22:27 +0000;
  • 79467f0 change to lapply by Jayaram Kancherla <jayaram.kancherla@gmail.com> 2019-04-02 01:19:13 +0000;
  • 2585aa7 update travis to use bioc-devel by Jayaram Kancherla <jayaram.kancherla@gmail.com> 2019-04-01 20:14:54 +0000;
  • 10b0de8 add tolerance to normfactors by Jayaram Kancherla <jayaram.kancherla@gmail.com> 2019-04-01 14:55:27 -0400;
  • 237560f version bump v1.25.3 by hcorrada <hcorrada@gmail.com> 2019-02-27 10:35:57 -0500;
  • c15ab95 Merge pull request <a href="#67">#67</a> from dombraccia/master by hcorrada <hcorrada@gmail.com> 2019-02-27 10:35:02 -0500;
  • 25e016b updated tolerance for wrenchNorm test by Domenick Braccia <dbraccia@umd.edu> 2019-02-26 21:37:14 -0500;
  • 053dc20 version bump v1.25.2 by hcorrada <hcorrada@gmail.com> 2019-02-25 16:46:12 -0500;
  • aa1ce7d Merge branch 'master' of https://github.com/HCBravoLab/metagenomeSeq by hcorrada <hcorrada@gmail.com> 2019-02-25 16:45:21 -0500;
  • bb4415e Merge pull request <a href="#66">#66</a> from dombraccia/master by hcorrada <hcorrada@gmail.com> 2019-02-25 16:43:34 -0500;
  • d113d81 Updated .rda files and test files by Domenick Braccia <dbraccia@umd.edu> 2019-02-05 13:41:26 -0500;
  • 7362cd7 Added new .rda files, updated unit tests and vignette by Domenick Braccia <dbraccia@umd.edu> 2019-02-04 17:30:05 -0500;
  • 65d6c5b Updating DESCRIPTION, NAMESPACE and R/allClasses.R by Domenick Braccia <dbraccia@umd.edu> 2019-02-04 17:15:43 -0500;
  • 2acdef7 added function by Domenick Braccia <dbraccia@umd.edu> 2019-01-28 16:51:08 -0500;
  • f518dc9 changed slot to be of class list instead of environment by Domenick Braccia <dbraccia@umd.edu> 2019-01-28 16:48:40 -0500;
  • ef8c1c5 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:10:47 -0500;
  • 80319dd Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:10:42 -0500;
  • 5f33b40 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:31 -0400;
  • c584c06 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:51 -0400;
  • 40d4c39 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:51:56 -0400;
  • 39ab332 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
  • 8a193a2 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:29 -0400;
  • 379d4ce version bump v1.21.2 by hcorrada <hcorrada@gmail.com> 2018-04-11 05:07:51 -0400;
  • 9310a9f Merge branch 'jnpaulson-master' by hcorrada <hcorrada@gmail.com> 2018-04-11 05:07:05 -0400;
  • 2c8eb3a added flexibility for fitFeatureModel by paulsoj1 <paulson.joseph@gene.com> 2018-04-09 02:36:33 -0400;
  • 046daca (origin/RELEASE_3_6, RELEASE_3_6) version bump v1.20.1 by hcorrada <hcorrada@gmail.com> 2017-12-11 14:13:41 -0500;
  • 9bf1737 update author list by hcorrada <hcorrada@gmail.com> 2017-12-11 14:07:23 -0500;
  • b74214c version bump v1.21.1 by hcorrada <hcorrada@gmail.com> 2017-12-11 14:12:24 -0500;
  • 1a56f51 update author list by hcorrada <hcorrada@gmail.com> 2017-12-11 14:07:23 -0500;
  • 07562de bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:47 -0400;
  • 465fe3a bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:01 -0400;
  • a8c2045 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • ba4e3c8 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • b1ba3ad bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 72c30a6 remove print statement; version bump by Hector Corrada Bravo <hcorrada@gmail.com> 2017-04-15 21:50:57 +0000;
  • 0d358af version bump by Hector Corrada Bravo <hcorrada@gmail.com> 2017-04-12 16:21:16 +0000;
  • bb82536 Fixing documentation, fixing case of variable names, adding default return option for taxonomy by Hector Corrada Bravo <hcorrada@gmail.com> 2017-04-12 16:20:10 +0000;
  • fb1ee86 version bump by Hector Corrada Bravo <hcorrada@gmail.com> 2017-04-06 17:27:34 +0000;
  • 443009a update documentation by Hector Corrada Bravo <hcorrada@gmail.com> 2017-04-06 17:27:27 +0000;
  • 5505bd1 Making aggregate by taxonomy return full hierarchy tree and connecting to fitTimeSeries aggregate calls by Hector Corrada Bravo <hcorrada@gmail.com> 2017-04-06 17:27:14 +0000;
  • f2c403b fixed typo by Hector Corrada Bravo <hcorrada@gmail.com> 2017-04-06 17:27:08 +0000;
  • 23f492e bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • ed4c117 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 85f71d2 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 52f618c version bump by Hector Corrada Bravo <hcorrada@gmail.com> 2016-10-15 08:30:58 +0000;