Package: metagenomeSeq
Title: Statistical analysis for sparse high-throughput sequencing
Version: 1.1.8
Date: 2013-06-11
Author: Joseph Nathaniel Paulson, Mihai Pop,  Hector Corrada Bravo
Maintainer: Joseph N. Paulson <jpaulson@umiacs.umd.edu>
Description: metagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed to address the effects of both normalization and under-sampling of microbial communities on disease association detection and the testing of feature correlations.
License: Artistic-2.0
Depends: R(>= 3.0), Biobase, limma, matrixStats, methods,
        RColorBrewer, gplots
Suggests: annotate
biocViews: Bioinformatics, DifferentialExpression, Metagenomics,
        Visualization
Collate: 'zigControl.R' 'cumNorm.R' 'plotOTU.R' 'fitZig.R'
        'doCountMStep.R' 'doZeroMStep.R' 'doEStep.R' 'getZ.R' 'getPi.R'
        'getCountDensity.R' 'getNegativeLogLikelihoods.R'
        'isItStillActive.R' 'getEpsilon.R' 'load_meta.R'
        'load_phenoData.R' 'exportMat.R' 'exportStats.R'
        'cumNormStat.R' 'plotGenus.R' 'aggregateM.R' 'cumNormMat.R'
        'load_metaQ.R' 'allClasses.R' 'MRtable.R' 'MRcoefs.R'
        'plotMRheatmap.R' 'plotCorr.R' 'MRfisher.R' 'MRfulltable.R'
URL: http://cbcb.umd.edu/software/metagenomeSeq