| f7060c99 | Package: metagenomeSeq Title: Statistical analysis for sparse high-throughput sequencing |
| 59db78e7 | Version: 1.15.6 |
| c08f4e60 | Date: 2016-07-21 |
| e093bc69 | Author: Joseph Nathaniel Paulson, Hisham Talukder, Mihai Pop, Hector Corrada
Bravo
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| dfc9cfa7 | Maintainer: Joseph N. Paulson <jpaulson@jimmy.harvard.edu> |
| 70f003bf | Description: metagenomeSeq is designed to determine features (be it |
| e093bc69 | Operational Taxanomic Unit (OTU), species, etc.) that are
differentially abundant between two or more groups of multiple
samples. metagenomeSeq is designed to address the effects of
both normalization and under-sampling of microbial communities
on disease association detection and the testing of feature
correlations.
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| f7060c99 | License: Artistic-2.0 |
| e093bc69 | Depends:
R(>= 3.0),
Biobase,
limma,
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| da6bbd1f | glmnet, |
| e093bc69 | methods, |
| 0d33c2a8 | RColorBrewer |
| e093bc69 | Suggests:
annotate,
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| 2dbb5b55 | BiocGenerics, |
| bc2f91d1 | biomformat, |
| e093bc69 | knitr, |
| 58e2f308 | gss, |
| 8ec32a32 | testthat (>= 0.8), |
| 7284c919 | vegan,
interactiveDisplay
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| 58e2f308 | Imports: |
| 0d33c2a8 | parallel,
matrixStats,
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| da6bbd1f | foreach,
Matrix,
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| 0d33c2a8 | gplots |
| 70f003bf | VignetteBuilder: knitr |
| 4144cbaa | URL: https://github.com/nosson/metagenomeSeq/ BugReports: https://github.com/nosson/metagenomeSeq/issues |
| fdfd989f | biocViews: Classification, Clustering, GeneticVariability,
DifferentialExpression, Microbiome, Metagenomics, Normalization, Visualization,
MultipleComparison, Sequencing, Software
RoxygenNote: 5.0.1
|