Name Mode Size
R 040000
data 040000
inst 040000
man 040000
tests 040000
vignettes 040000
.Rbuildignore 100644 0 kb
.gitignore 100644 0 kb
.travis.yml 100644 0 kb
DESCRIPTION 100644 1 kb
NAMESPACE 100644 2 kb
NEWS 100644 4 kb
README.md 100644 2 kb
metagenomeSeq.Rproj 100644 0 kb
README.md
metagenomeSeq ============= Statistical analysis for sparse high-throughput sequencing [![Travis-CI Build Status](https://travis-ci.org/HCBravoLab/metagenomeSeq.svg?branch=master)](https://travis-ci.org/HCBravoLab/metagenomeSeq) <a href="http://www.bioconductor.org/packages/devel/bioc/html/metagenomeSeq.html#since"><img border="0" src="http://www.bioconductor.org/shields/years-in-bioc/metagenomeSeq.svg" title="How long since the package was first in a released Bioconductor version (or is it in devel only)."></a> <a href="http://bioconductor.org/packages/stats/bioc/metagenomeSeq.html"><img border="0" src="http://www.bioconductor.org/shields/downloads/metagenomeSeq.svg" title="Percentile (top 5/20/50% or 'available') of downloads over last 6 full months. Comparison is done across all package categories (software, annotation, experiment)."></a> <a href="https://support.bioconductor.org/t/metagenomeSeq/"><img border="0" src="http://www.bioconductor.org/shields/posts/metagenomeSeq.svg" title="Support site activity, last 6 months: tagged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts."></a> <a href="http://www.bioconductor.org/packages/devel/bioc/html/metagenomeSeq.html#svn_source"><img border="0" src="http://www.bioconductor.org/shields/commits/bioc/metagenomeSeq.svg" title="average Subversion commits (to the devel branch) per month for the last 6 months"></a> metagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed to address the effects of both normalization and undersampling of microbial communities on disease association detection and the testing of feature correlations. To install the latest release version of metagenomeSeq: ```S source("http://bioconductor.org/biocLite.R") biocLite("metagenomeSeq") ``` To install the latest development version of metagenomeSeq: ```S install.packages("devtools") library("devtools") install_github("Bioconductor-mirror/metagenomeSeq") ``` Author: [Joseph Nathaniel Paulson](http://bcb.dfci.harvard.edu/~jpaulson), Hisham Talukder, [Mihai Pop](http://www.cbcb.umd.edu/~mpop), [Hector Corrada Bravo](http://www.cbcb.umd.edu/~hcorrada) Maintainer: Joseph N. Paulson : jpaulson at jimmy.harvard.edu Website: www.cbcb.umd.edu/software/metagenomeSeq