1. mdp
  2. man
  3. pathway_summary.Rd
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adding gridExtra in NAMESPACE

Thiago Hirata authored on 19/12/2018 18:23:36
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man/pathway_summary.Rd
History View file @19d97d3
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@@ -5,7 +5,8 @@
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 \title{print pathways
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 generates a summary plot for pathways and sample score plot of best gene set}
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 \usage{
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-pathway_summary(sample_results, path, file_name, control_samples, control_lab)
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+pathway_summary(sample_results, path, file_name, control_samples,
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+  control_lab)
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 }
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 \arguments{
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 \item{sample_results}{list of sample scores for each geneset}
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bioc check changes

Melissa Lever authored on 01/04/2018 21:35:55
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man/pathway_summary.Rd
History View file @ad9282f
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@@ -18,6 +18,10 @@ pathway_summary(sample_results, path, file_name, control_samples, control_lab)
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 \item{control_lab}{label that specifies control class}
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 }
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+\value{
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+data frame of signal to noise ratio of control vc test sample scores
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+for each pathway
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+}
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 \description{
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 print pathways
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 generates a summary plot for pathways and sample score plot of best gene set
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r cmd checks

Melissa Lever authored on 30/03/2018 15:11:24
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man/pathway_summary.Rd
History View file @b11cc86
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@@ -3,11 +3,22 @@
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 \name{pathway_summary}
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 \alias{pathway_summary}
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 \title{print pathways
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-summary plot for pathways and sample score plot of best gene set}
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+generates a summary plot for pathways and sample score plot of best gene set}
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 \usage{
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 pathway_summary(sample_results, path, file_name, control_samples, control_lab)
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 }
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+\arguments{
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+\item{sample_results}{list of sample scores for each geneset}
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+
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+\item{path}{directory to save images}
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+
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+\item{file_name}{name of saved imaged}
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+
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+\item{control_samples}{list of control sample names}
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+
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+\item{control_lab}{label that specifies control class}
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+}
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 \description{
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 print pathways
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-summary plot for pathways and sample score plot of best gene set
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+generates a summary plot for pathways and sample score plot of best gene set
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 }
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pathways

melissa authored on 27/02/2018 18:00:21
Showing1 changed files
man/pathway_summary.Rd
History View file @aaac175
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new file mode 100644
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@@ -0,0 +1,13 @@
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/mdp.R
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+\name{pathway_summary}
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+\alias{pathway_summary}
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+\title{print pathways
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+summary plot for pathways and sample score plot of best gene set}
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+\usage{
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+pathway_summary(sample_results, path, file_name, control_samples, control_lab)
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+}
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+\description{
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+print pathways
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+summary plot for pathways and sample score plot of best gene set
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+}