% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/mdp.R

 \name{pathway_summary}
 \alias{pathway_summary}

 \title{print pathways

 generates a summary plot for pathways and sample score plot of best gene set}

 \usage{

 pathway_summary(sample_results, path, file_name, control_samples,
   control_lab)

 }

 \arguments{
 \item{sample_results}{list of sample scores for each geneset}
 
 \item{path}{directory to save images}
 
 \item{file_name}{name of saved imaged}
 
 \item{control_samples}{list of control sample names}
 
 \item{control_lab}{label that specifies control class}
 }

 \value{
 data frame of signal to noise ratio of control vc test sample scores 
 for each pathway
 }

 \description{
 print pathways

 generates a summary plot for pathways and sample score plot of best gene set

 }