1ad68d0 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 10:59:34 -0400;
0fae9f3 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 10:59:34 -0400;
cc9025d (origin/RELEASE_3_16, RELEASE_3_16) bump version by
Héctor Climente-González <hclimente@gmail.com>2023-01-11 17:31:12 +0900;
fc7683b moved memoise to Imports by
Héctor Climente-González <hclimente@gmail.com>2023-01-11 13:33:23 +0900;
cb778c6 force use dgCMatrix in mincut_c test by
Héctor Climente-González <hclimente@gmail.com>2022-09-26 14:16:15 +0900;
3674f53 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 15:47:34 +0000;
36d78b0 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 15:47:34 +0000;
4803cfa bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 16:42:06 +0000;
2777da8 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 16:42:06 +0000;
6f83da6 Pearson correlation as stability criterion (#8) by
Vivien Goepp <vivien.goepp@gmail.com>2021-07-29 08:16:59 +0000;
21f22dd (origin/RELEASE_3_13, RELEASE_3_13) fix by
Héctor Climente-González <hclimente@gmail.com>2021-06-29 15:35:34 +0200;
8bcb19b Merge branch 'master' into RELEASE_3_13 by
Héctor Climente-González <hclimente@gmail.com>2021-06-29 15:34:51 +0200;
989834a sigmod bugfix (#7) by
Héctor Climente-González <hclimente@gmail.com>2021-06-25 13:47:25 +0200;
24501a2 sigmod bugfix by
Héctor Climente-González <hclimente@gmail.com>2021-06-24 17:18:12 +0200;
719eea1 sigmod bugfix by
Héctor Climente-González <hclimente@gmail.com>2021-06-24 17:18:12 +0200;
fc94167 fixed scones: maxflow uses the adjacency not the laplacian by
Héctor Climente-González <hclimente@gmail.com>2021-06-24 17:10:32 +0200;
fb2a8dc added conda environment by
Héctor Climente-González <hclimente@gmail.com>2021-06-14 11:46:37 +0200;
70f9ad6 Merge branch 'master' of git.bioconductor.org:packages/martini by
Héctor Climente-González <hclimente@gmail.com>2021-06-09 17:48:14 +0200;
5db9dbe bump x.y.z version to odd y following creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-05-19 16:33:38 +0000;
70d4c22 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-05-19 16:33:38 +0000;
856afbb Update helper_skips.R by
Héctor Climente-González <hclimente@gmail.com>2021-04-13 09:54:21 +0200;
b4e184a Create codecov.yml by
Héctor Climente-González <hclimente@gmail.com>2021-04-13 09:53:58 +0200;
ad781a5 updated github actions by
hclimente <hclimente@gmail.com>2021-04-08 11:25:27 +0200;
2840ac3 addressed R CMD checks by
hclimente <hclimente@gmail.com>2021-04-08 10:26:17 +0200;
72f8240 added unit tests by
hclimente <hclimente@gmail.com>2021-04-08 09:55:41 +0200;
79f74d5 fixed documentation by
hclimente <hclimente@gmail.com>2021-04-06 22:44:48 +0200;
8d4ebe3 added generic scones and sigmod by
hclimente <hclimente@gmail.com>2021-04-06 22:31:20 +0200;
a1f8b97 updated CITATION by
hclimente <hclimente@gmail.com>2021-03-18 21:13:42 +0100;
d52c0b3 Update README.md by
Héctor Climente-González <hclimente@gmail.com>2021-03-02 16:21:57 +0100;
2b5a64b Merge branch 'devel' by
hclimente <hclimente@gmail.com>2021-03-02 16:06:38 +0100;
f8f3e69 family arguments not capitalized anymore by
hclimente <hclimente@gmail.com>2021-02-02 07:59:12 +0100;
07267aa bugfix: eta cannot be > than maxc by
hclimente <hclimente@gmail.com>2021-02-02 07:53:00 +0100;
12ec3e3 improved grid search: focus on trimmed cs by
hclimente <hclimente@gmail.com>2021-02-01 18:26:00 +0100;
1434dc3 handle missing values in phenotype simulation by
hclimente <hclimente@gmail.com>2021-02-01 15:32:49 +0100;
862a5ea bugfix: rename all snp.names to snp.name by
hclimente <hclimente@gmail.com>2021-02-01 14:42:49 +0100;
1ede311 memoise in CRAN by
hclimente <hclimente@gmail.com>2021-01-27 15:28:44 +0100;
2405e07 added linear model testing by
hclimente <hclimente@gmail.com>2021-01-21 15:37:47 +0100;
fdec107 parametrized glm's link and family arguments by
hclimente <hclimente@gmail.com>2021-01-21 10:52:55 +0100;
40a2e2d fix plot_ideogram by
hclimente <hclimente@gmail.com>2021-01-12 20:04:48 +0100;
739935a fix bioccheck by
hclimente <hclimente@gmail.com>2021-01-08 19:51:54 +0100;
f3faf86 bioconductor style by
hclimente <hclimente@gmail.com>2021-01-08 18:08:36 +0100;
1f37c7f Merge branch 'devel' of github.com:hclimente/martini into devel by
hclimente <hclimente@gmail.com>2021-01-08 17:53:08 +0100;
aee09ca fixed plot_ideogram by
hclimente <hclimente@gmail.com>2021-01-08 17:48:34 +0100;
63dfe8a Update check-bioc.yml by
Héctor Climente-González <hclimente@gmail.com>2020-12-21 17:30:25 +0100;
29c046f removed plot_snp_module by
hclimente <hclimente@gmail.com>2020-12-21 10:58:28 +0100;
742e77a fix plot_ideogram by
hclimente <hclimente@gmail.com>2020-12-21 10:44:54 +0100;
8305324 first go at adding viz functions from blur by
hclimente <hclimente@gmail.com>2020-12-21 10:05:47 +0100;
242adb4 removed ancient function 2/2 by
hclimente <hclimente@gmail.com>2020-12-18 18:11:09 +0100;
648949a removed ancient function by
hclimente <hclimente@gmail.com>2020-12-18 18:00:11 +0100;
e101a42 bugfix by
hclimente <hclimente@gmail.com>2020-12-18 17:41:25 +0100;
6f31bc9 removed source commands in testing by
hclimente <hclimente@gmail.com>2020-12-18 17:22:39 +0100;
339d4aa output of scones* and sigmod* are subnetworks by
hclimente <hclimente@gmail.com>2020-12-18 17:10:51 +0100;
d3c463a moved some unnecesary imports to suggested by
hclimente <hclimente@gmail.com>2020-12-18 16:07:40 +0100;
470924e added legacy interface by
hclimente <hclimente@gmail.com>2020-12-18 15:38:25 +0100;
7181747 test coverage to 100% by
hclimente <hclimente@gmail.com>2020-12-18 12:25:19 +0100;
350ea64 consistency renamed to stability by
hclimente <hclimente@gmail.com>2020-12-18 11:08:07 +0100;
a19f7a2 snp2gene renamed snp2ensembl by
hclimente <hclimente@gmail.com>2020-12-17 17:08:01 +0100;
f01bc44 check_installed vectorized by
hclimente <hclimente@gmail.com>2020-12-17 16:02:33 +0100;
e8f2929 replaced big_network by helper function by
hclimente <hclimente@gmail.com>2020-12-17 15:35:00 +0100;
fed69c6 license shifted to GPL-3 to match imported libraries' by
hclimente <hclimente@gmail.com>2020-12-17 15:32:56 +0100;
beb65a0 fixed params of scones.cv and sigmod.cv by
hclimente <hclimente@gmail.com>2020-12-14 17:04:36 +0100;
4fe1e46 removed unneded Cephes library by
hclimente <hclimente@gmail.com>2020-12-14 16:13:43 +0100;
af01215 code cleaned by
hclimente <hclimente@gmail.com>2020-12-14 16:09:37 +0100;
27a8186 code reorganized by
hclimente <hclimente@gmail.com>2020-12-14 15:35:54 +0100;
3c1bff5 mincut.cv refactored by
hclimente <hclimente@gmail.com>2020-12-14 13:25:55 +0100;
62105bb moved db functions to its own script by
hclimente <hclimente@gmail.com>2020-12-11 17:16:18 +0100;
b92846d added clustering coefficients by
hclimente <hclimente@gmail.com>2020-12-11 17:08:43 +0100;
0d6bab6 added clustering coefficient by
hclimente <hclimente@gmail.com>2020-12-11 15:25:52 +0100;
7dd6f02 fixed checks by
hclimente <hclimente@gmail.com>2020-12-10 20:45:18 +0100;
4beb0c0 fixed sigmod 2/2 by
hclimente <hclimente@gmail.com>2020-12-10 20:04:29 +0100;
cd23aa4 fixed CI issues by
hclimente <hclimente@gmail.com>2020-12-10 19:31:51 +0100;
a37a9a0 Update check-bioc.yml by
Héctor Climente-González <hclimente@gmail.com>2020-12-10 19:21:31 +0100;
1f4b38c Update check-bioc.yml by
Héctor Climente-González <hclimente@gmail.com>2020-12-10 19:14:19 +0100;
6786329 fixing sigmod (WIP) by
hclimente <hclimente@gmail.com>2020-12-10 19:04:28 +0100;
ac89e92 Update check-bioc.yml by
Héctor Climente-González <hclimente@gmail.com>2020-12-10 19:03:23 +0100;
18feaed Update check-bioc.yml by
Héctor Climente-González <hclimente@gmail.com>2020-12-10 18:33:15 +0100;
91c25d2 fixed indentation by
hclimente <hclimente@gmail.com>2020-12-09 16:30:10 +0100;
2566b92 added makevars for windows by
hclimente <hclimente@gmail.com>2020-12-09 15:07:11 +0100;
5fb7268 fixed stuff in bioccheck by
hclimente <hclimente@gmail.com>2020-12-09 13:51:24 +0100;
0efcca7 removed unneded linker flag by
hclimente <hclimente@gmail.com>2020-12-09 12:50:24 +0100;
c964ab3 remove legacy functions, since they depend on Rgin by
hclimente <hclimente@gmail.com>2020-12-09 12:32:23 +0100;
c19fda5 temporarily install memoise from github by
hclimente <hclimente@gmail.com>2020-12-09 12:22:07 +0100;
fffb25b remove Rgin dependency by
hclimente <hclimente@gmail.com>2020-12-09 12:18:32 +0100;
5a73e2a run_scones renamed to mincut_c by
hclimente <hclimente@gmail.com>2020-12-09 11:26:49 +0100;
16215c2 document new sigmod and scones functions by
hclimente <hclimente@gmail.com>2020-12-08 18:34:09 +0100;
00947f0 fix remotes by
hclimente <hclimente@gmail.com>2020-12-04 16:40:11 +0100;
b08162c added comma by
hclimente <hclimente@gmail.com>2020-12-04 16:35:08 +0100;
9464d4c install memoise from github by
hclimente <hclimente@gmail.com>2020-12-04 16:29:07 +0100;
333bda9 Merge branch 'devel' of github.com:hclimente/martini into devel by
hclimente <hclimente@gmail.com>2020-12-04 16:24:39 +0100;
cbd6b0c go back to future memoise 2/2 by
hclimente <hclimente@gmail.com>2020-12-03 23:26:59 +0100;
a3c1022 go back to future memoise by
hclimente <hclimente@gmail.com>2020-12-03 23:26:10 +0100;
f3e6703 fix ci in mac by
hclimente <hclimente@gmail.com>2020-12-04 13:24:16 +0100;
