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  • df48c18 (HEAD -> devel, origin/devel, origin/HEAD) Removed zlibbioc dependency. by Jim MacDonald <jmacdon@uw.edu> 2025-01-10 08:12:50 -0800;
  • d0be981 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:21:23 -0400;
  • f1aa5d3 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:21:23 -0400;
  • 7cb4573 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:11:18 -0400;
  • 64c5aa3 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:11:18 -0400;
  • aedd5af bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:31:59 -0400;
  • da98c62 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:31:59 -0400;
  • 0461803 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:38:51 -0400;
  • 8196d48 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:38:51 -0400;
  • 88a9f92 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:35:30 -0400;
  • 412affc (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:35:30 -0400;
  • d9e7e85 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:54:49 +0000;
  • 85c8968 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:54:49 +0000;
  • c2dbb15 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:45:53 +0000;
  • 82ecd0f (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:45:53 +0000;
  • 8703fe5 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:33:05 +0000;
  • f277e17 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:33:05 +0000;
  • f47a1db bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:22:21 -0400;
  • 02aa975 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:22:21 -0400;
  • b86284b bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:08:17 +0000;
  • 13c3388 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:08:17 +0000;
  • 8d51307 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:34:31 -0400;
  • 9981b3c (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:07:24 -0400;
  • aabbfe6 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:10:29 -0400;
  • 900ece3 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:01 -0400;
  • 576a58f bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:26 -0400;
  • 6f513e3 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:41 -0400;
  • f1b2bac bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:36 -0400;
  • f6b48e9 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:34:56 -0400;
  • 04e7e0e bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:04 -0400;
  • 3ff646d (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:38:25 -0400;
  • 628e1b5 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • b88a3e9 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • d1eff74 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • e190980 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 07c5e5e (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • e9d1203 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • a6b0e9b bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • e365cb0 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • a526d04 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 067f969 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • da3a90e (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 8c9e754 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 0f1aca3 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • a90f04d (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 4247b42 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 37661a0 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • eee5896 (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • ab88da3 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • bef0684 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 506d0ad (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • b56ef32 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • cdb5151 Various changes; importing affyio, changed code for cdf packages to import AnnotationDbi and utils and changed .onLoad to no longer require(AnnotationDbi). Also changed default maintainer and email. by James MacDonald <jmacdon@med.umich.edu> 2014-02-24 15:47:28 +0000;
  • ac252f9 Changes to make.cdf.package to reflect changes to xy2indices and indices2xy in the affy package. by James MacDonald <jmacdon@med.umich.edu> 2014-02-18 20:21:54 +0000;
  • 5afbacb Changes to vignettes dir to accommodate R-devel by James MacDonald <jmacdon@med.umich.edu> 2013-10-21 16:59:45 +0000;
  • a036c6d bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 97536c3 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • e2316f8 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • d63f0b1 use path.package instead of deprecated .path.package by Martin Morgan <mtmorgan@fhcrc.org> 2013-10-07 20:53:55 +0000;
  • cb1cf07 (origin/RELEASE_2_12, RELEASE_2_12) Updating maintainer email. by James MacDonald <jmacdon@med.umich.edu> 2013-04-04 17:51:44 +0000;
  • 94d5d4c Updating maintainer email by James MacDonald <jmacdon@med.umich.edu> 2013-04-04 17:47:27 +0000;
  • dca6282 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 9d4e674 Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • 1d7f380 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • 5c2805b Small fix in make.cdf.packages man page by James MacDonald <jmacdon@med.umich.edu> 2013-03-27 20:35:30 +0000;
  • 19ea0b1 Fixed a buglet in make.cdf.package where we relied on partial matching in a call to packageDescription(). by James MacDonald <jmacdon@med.umich.edu> 2013-03-25 16:16:47 +0000;
  • 89d03de Added affyio as a dependency, since we call C level functions from that package. by James MacDonald <jmacdon@med.umich.edu> 2013-03-25 16:13:36 +0000;
  • 220a482 Removed dependency on AnnotationDbi, as cdfs do not depend on that package. by James MacDonald <jmacdon@med.umich.edu> 2013-01-24 14:41:23 +0000;
  • 2ae674e bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • 96640c5 (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • 8d5deb1 Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • ec17708 Edits templates to include appropriate new annot terms for package types. by Marc Carlson <mcarlson@fhcrc.org> 2012-09-10 19:43:39 +0000;
  • dc7dc47 bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
  • 0fa588f (origin/RELEASE_2_10, RELEASE_2_10) Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
  • 7fd8566 first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
  • 363e4d9 version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
  • c2872ac (origin/RELEASE_2_9, RELEASE_2_9) Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
  • f5368f2 bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
  • 96ce670 Changes the templates for the cdf packages by Marc Carlson <mcarlson@fhcrc.org> 2011-10-12 20:26:58 +0000;
  • 60e2f00 Makes adjustment for new R requirements. by Marc Carlson <mcarlson@fhcrc.org> 2011-08-22 21:14:14 +0000;
  • 6bfba2b use zlibbioc for zlib by Martin Morgan <mtmorgan@fhcrc.org> 2011-06-14 21:36:25 +0000;
  • 6c60043 use $(ZLIB_LIBS) rather than -Rlibz in Makevars.win by Martin Morgan <mtmorgan@fhcrc.org> 2011-04-30 23:17:17 +0000;
  • 78a8da4 Bumped version numbers again for new BioC 2.9 devel cycle. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:36:43 +0000;
  • 04d463e (origin/RELEASE_2_8, RELEASE_2_8) Creating branch for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:32:21 +0000;
  • d2824fe Bumped version numbers for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:27:35 +0000;
  • 1b383be fixes to handle non square arrays by Ben Bolstad <bolstad@stat.berkeley.edu> 2010-11-07 04:48:33 +0000;
  • 594cc49 Bumped version numbers again for new BioC 2.8 devel cycle. ERRATA: Previous bump was for BioC 2.7 release (of course), not 2.6! by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:57:44 +0000;
  • 08e2587 (origin/RELEASE_2_7, RELEASE_2_7) Creating branch for BioC 2.7 release by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:49:17 +0000;
  • 6cd06fd Bumped version numbers for BioC 2.6 release by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:34:23 +0000;
  • 68ff19e Remove unneeded .First.lib function. by Patrick Aboyoun <unknown> 2010-04-23 05:11:18 +0000;
  • ffba17f Bumped version numbers for BioC 2.7 trunk by Patrick Aboyoun <unknown> 2010-04-22 18:45:15 +0000;
  • 984a28d (origin/RELEASE_2_6, RELEASE_2_6) git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/makecdfenv@46404 bc3139a8-67e5-0310-9ffc-ced21a209358 by Patrick Aboyoun <unknown> 2010-04-22 18:36:49 +0000;
  • 1884172 Bumped version numbers for BioC 2.6 release by Patrick Aboyoun <unknown> 2010-04-22 18:21:23 +0000;
  • 3dae869 Forgot to add Imports directive to DESCRIPTION file for last commit... by James MacDonald <jmacdon@med.umich.edu> 2009-12-01 16:30:09 +0000;
  • ebdff35 Shortened load path by importing functions from Biobase and affy/affyio instead of Depending on those packages. by James MacDonald <jmacdon@med.umich.edu> 2009-11-30 17:40:34 +0000;
  • 7631871 Package version bump for BioC 2.6 devel. by Patrick Aboyoun <unknown> 2009-10-27 23:45:24 +0000;
  • 1dd04c9 (origin/RELEASE_2_5, RELEASE_2_5) git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/makecdfenv@42685 bc3139a8-67e5-0310-9ffc-ced21a209358 by Patrick Aboyoun <unknown> 2009-10-27 23:38:58 +0000;
  • bf96246 Package version bump for BioC 2.5 release. by Patrick Aboyoun <unknown> 2009-10-27 23:33:29 +0000;
  • 7812a91 Fixed R CMD check warnings for suspect links in documentation objects. Bumped version number. by Chao-Jen Wong <cwon2@fhcrc.org> 2009-09-19 00:21:08 +0000;
  • 2b172ed Reformatted the Licence information in DESCRIPTION files to bring them into compliance. by Patrick Aboyoun <unknown> 2009-09-06 03:06:55 +0000;