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  • 4864552 (HEAD -> master, origin/master, origin/HEAD) fixes in several help pages to avoid warnings; version number bumped to 1.33.1 by UBod <ulrich@bodenhofer.com> 2022-11-16 17:06:00 +0100;
  • 55e5052 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:39 -0400;
  • 559f77b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:39 -0400;
  • c8255e8 Fixed dependency to Matrix package by UBod <ulrich@bodenhofer.com> 2022-09-20 12:23:33 +0200;
  • 3b4198e minor changes in coercions in accordance with latest version of 'Matrix' package by UBod <ulrich@bodenhofer.com> 2022-08-23 10:25:11 +0200;
  • 05c043e bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:22:32 +0000;
  • 90d8024 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:22:32 +0000;
  • 1f83eb1 (origin/RELEASE_3_14, RELEASE_3_14) Fixed compatibility with STRICT_R_HEADERS; now builds with Rcpp 1.0.8; version number bumped to 1.28.1 by UBod <ulrich@bodenhofer.com> 2022-01-25 10:54:59 +0100;
  • a228803 Fixed compatibility with STRICT_R_HEADERS; now builds with Rcpp 1.0.8 by UBod <ulrich@bodenhofer.com> 2022-01-14 14:59:22 +0100;
  • fe5df12 Updated URLs and DOIs by UBod <ulrich@bodenhofer.com> 2022-01-14 14:58:59 +0100;
  • 3fcdb99 Updated URLs and DOIs by UBod <ulrich@bodenhofer.com> 2022-01-14 14:58:35 +0100;
  • 419e6f9 Fixed compatibility with STRICT_R_HEADERS; now builds with Rcpp 1.0.8 by UBod <ulrich@bodenhofer.com> 2022-01-14 14:57:31 +0100;
  • 7c35dc1 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:17:16 +0000;
  • 1bedac4 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:17:15 +0000;
  • 6abd0f9 (origin/RELEASE_3_13, RELEASE_3_13) various fixes in release branch; version number bumped to 1.26.1 by UBodenhofer <ulrich@quomatic.ai> 2021-06-18 15:06:41 +0200;
  • 3331cff fix in evaluatePrediction(); version number bumped to 1.27.1 by UBodenhofer <ulrich@quomatic.ai> 2021-06-18 14:50:36 +0200;
  • e237f26 minor fix in C++ code; fix in kebabsDemo(); version number bumped to 1.27.1 by UBodenhofer <ulrich@quomatic.ai> 2021-06-16 22:25:06 +0200;
  • eafdedd bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:09:10 +0000;
  • 0acb685 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:09:10 +0000;
  • 2b0d37d fixed Mac OS warning; version number bumped to 1.25.2 by UBodenhofer <ulrich@quomatic.ai> 2021-05-16 21:49:23 +0200;
  • 5750934 fix in MismatchC.cpp; version number bumped to 1.25.1 by UBodenhofer <ulrich@quomatic.ai> 2021-05-05 21:48:12 +0200;
  • cc6948b Updated inst/NEWS by UBodenhofer <ulrich@quomatic.ai> 2021-04-29 11:56:00 +0200;
  • 0a12bb3 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:00:26 -0400;
  • e4fb714 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:00:26 -0400;
  • 2d04bd4 Replace use of DataTable with DataFrame by Hervé Pagès <hpages@fredhutch.org> 2020-05-01 23:04:24 -0700;
  • 8cd0eb7 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:44:54 +0000;
  • 4b5d1a8 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:44:54 +0000;
  • 494ae11 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:38:32 -0400;
  • fe29819 (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:06 -0400;
  • 68b1820 removed change history from vignette; version number bumped to 1.19.1 by UBodenhofer <ulrich@quomatic.ai> 2019-10-18 15:39:21 +0200;
  • 7569e3a bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:53 -0400;
  • 73a6bce (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:50 -0400;
  • 7f7820d bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:33 -0400;
  • 726b350 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:56 -0400;
  • df379b2 additional updates from BiocInstaller to BiocManager by LiNk-NY <marcel.ramosperez@roswellpark.org> 2018-09-06 15:51:50 +0000;
  • 42a5bdd replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:51:10 -0400;
  • 013971c updated DESCRIPTION (add GitHub URL) by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2018-05-15 14:23:51 +0200;
  • 9e4130c updated README by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2018-05-15 14:17:07 +0200;
  • 147986d corrected README by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2018-05-15 13:46:58 +0200;
  • ee8f6bd added README by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2018-05-15 13:25:31 +0200;
  • 19b2387 added .gitignore by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2018-05-15 13:21:41 +0200;
  • ba498e0 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • 7012aa5 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:35 -0400;
  • d592d82 Remove C function getXStringSetClass() by Hervé Pagès <hpages@fredhutch.org> 2018-03-15 19:31:17 -0700;
  • acf9398 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:51 -0400;
  • 365df61 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:44 -0400;
  • 1b3df02 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • bec85e5 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 5ccabcd bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 4de9cf8 (origin/RELEASE_3_4, RELEASE_3_4) Bump versions of all packages that define "c" methods by Herve Pages <hpages@fhcrc.org> 2017-03-16 02:03:50 +0000;
  • 855aedd follow renaming of union classes in S4Vectors by Herve Pages <hpages@fhcrc.org> 2017-02-01 12:59:21 +0000;
  • c30ae6a bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 93e62f2 Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 61cdb27 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 6f5b8e1 fixes of citation and news file; version number bumped to 1.7.3 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2016-08-31 08:23:38 +0000;
  • a5fc05b (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 33f0adb Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • 7d45f8f Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 139feac Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 188b700 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 80e35e4 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • a727b62 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 5b19f62 further minor improvements; version number bumped to 1.5.4 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2016-04-29 05:26:22 +0000;
  • 05dc90c Various minor fixes and improvements; version number bumped to 1.5.3 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2016-04-26 07:03:34 +0000;
  • c19cebe Minor update of template of vignette by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2016-04-18 14:11:19 +0000;
  • df62f46 several minor adaptations; version number bumped to 1.5.2 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2016-04-13 06:35:58 +0000;
  • b98ab88 (origin/RELEASE_3_2, RELEASE_3_2) new function and error corrections by Johannes Palme <palme@bioinf.jku.at> 2015-10-29 22:12:14 +0000;
  • eec318b new function and error corrections by Johannes Palme <palme@bioinf.jku.at> 2015-10-28 06:07:23 +0000;
  • 3b562e9 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 12b5954 Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 57818d6 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 72bd201 error corrections by Johannes Palme <palme@bioinf.jku.at> 2015-10-13 11:23:08 +0000;
  • b983639 (origin/RELEASE_3_1, RELEASE_3_1) Minor updates; version number bumped to 1.2.3 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-05-21 12:04:50 +0000;
  • 8f6e108 Minor updates; version number bumped to 1.3.3 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-05-21 12:02:52 +0000;
  • 7c820cd Minor fixes and updates; version number bumped to 1.3.2 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-05-11 06:26:25 +0000;
  • 8888d9a Minor fixes and updates; version number bumped to 1.2.2 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-05-11 06:26:07 +0000;
  • c6a9e78 Minor fixes and updates; version number bumped to 1.2.1 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-04-21 15:27:41 +0000;
  • 1543e62 Minor fixes and updates; version number bumped to 1.3.1 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-04-21 15:15:12 +0000;
  • 90bb536 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 7654300 Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 251f463 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 9b1e91c major update with several extensions and fixes; version number bumbed to 1.1.9 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-04-10 14:10:05 +0000;
  • 3b5fb6a (origin/RELEASE_3_0) Additional accessors; version bumped to 1.0.5 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-03-03 21:23:27 +0000;
  • 4093132 Added accessors to ModelSelectionResult class; version bump to 1.1.8 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-03-02 22:00:19 +0000;
  • c844612 Upgrade to 1.1.7 in order to fix issues with the latest version of LiblineaR by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-02-09 07:43:55 +0000;
  • cca7ccc Update to 1.0.4 to fix issues with new version of LiblineaR by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-02-08 22:36:36 +0000;
  • 61e6730 Several updates; version number bump to 1.0.3 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-01-22 21:35:18 +0000;
  • 68ea85b Removal of vignette file to facilitate renaming of source file by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-01-22 21:34:02 +0000;
  • ed2300c Several updates -> new version 1.1.6 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-01-21 12:59:19 +0000;
  • b064e82 Rename of vignette source by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-01-12 14:34:34 +0000;
  • 8baf24f Rename of vignette source by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-01-12 14:33:34 +0000;
  • 4bf642b Updates to version 1.1.5 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2015-01-12 14:17:22 +0000;
  • 27b83e7 added missing file computeROCandAUC.Rd by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2014-12-04 13:05:23 +0000;
  • d6322e0 Version bump to 1.1.4 to trigger new build and check by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2014-12-03 20:04:15 +0000;
  • 27c81ac Check in of two missing .Rd files by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2014-12-03 20:01:41 +0000;
  • 475a634 fix to adapt to changed Biostrings/S4Vectors API by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2014-12-01 18:20:14 +0000;
  • 6e96bba minor updates; version bumped to 1.0.2 by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2014-12-01 15:20:29 +0000;
  • ed642e9 Update to version 1.1.2; see inst/NEWS for details by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2014-11-28 12:49:36 +0000;
  • 02c6c27 'seq' member was renamed 'ptr' in data structs Chars_holder, Ints_holder, and Doubles_holder. by Herve Pages <hpages@fhcrc.org> 2014-11-25 10:46:00 +0000;
  • dc5aa58 Relaxed dependency to R 3.1.0; minor bug fixes; C compiler warnings fixed for Mac OS X by Ulrich Bodenhofer <bodenhofer@bioinf.jku.at> 2014-11-14 09:03:19 +0000;