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[](https://zenodo.org/doi/10.5281/zenodo.10360070)
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<div align="center">
<a href="https://github.com/phipsonlab/jazzPanda">
<img src="https://github.com/phipsonlab/jazzPanda/blob/main/inst/images/jazzPanda_logo.png" alt="Logo" width="200" height="200">
</a>
<h3 align="center">jazzPanda: A hybrid approach to find spatially relevant marker genes
in image-based spatial transcriptomics data </h3>
<p align="center">
<br />
<a href="https://phipsonlab.github.io/jazzPanda/articles/jazzPanda.html"><strong>Explore the vignette ยป</strong></a>
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<br />
</p>
</div>
## Introduction
The jazzPanda package contains functions to find marker genes
based on the spatial coordinates for imaging-based spatial transcriptomics
technologies including 10x Xenium, NanoString CosMx and Vizgen MERSCOPE.
## Installation
To install jazzPanda from Bioconductor, use the following commands:
``` r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("jazzPanda")
```
To install jazzPanda from github, use the following commands:
``` r
library(devtools)
devtools::install_github("phipsonlab/jazzPanda")
```
In order to view the vignette for jazzPanda use the following command:
``` r
browseVignettes("jazzPanda")
```
