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README.md
isomiRs ======= <img src="https://raw.githubusercontent.com/lpantano/isomiRs/main/inst/stickers/isomirs.png" width="150" height="150" align="right"/> [![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.45382.svg)](http://dx.doi.org/10.5281/zenodo.45382) [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) [![Build status](https://secure.travis-ci.org/lpantano/isomiRs.png)](https://travis-ci.org/lpantano/isomiRs) [![coverage](https://img.shields.io/codecov/c/github/lpantano/isomiRs/master.svg)](https://codecov.io/github/lpantano/isomiRs?branch=master) Analyze isomiRs from seqbuster tool or any BAM file after using [seqbuster miraligner](http://seqcluster.readthedocs.io/mirna_annotation.html#mirna-isomirs-annotation-with-python) [Bioconductor]: https://bioconductor.org [devtools]: https://cran.r-project.org/package=devtools [R]: https://www.r-project.org ## Installation This is an [R][] package. ### [Bioconductor][] stable version ```r if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") install.packages("BiocManager") BiocManager::install("isomiRs") ``` ### [Bioconductor][] latest version ```r devtools::install_git("https://git@git.bioconductor.org/packages/isomiRs") ``` ### [devtools][] development version ```r install.packages("devtools") devtools::install_github("lpantano/isomiRs") ```