Package: isobar Title: R package for the analysis and quantitation of isobarically tagged MSMS proteomics data Description: isobar provides methods for preprocessing, normalization, and report generation for the analysis of proteomics data generated by Mass spectrometers using isobaric peptide tags, such as iTRAQ and TMT. PDF and Excel reports can automatically be generated based on a configuration file. Include modules for validating and integrating data focussing on post-translational protein modifications (isobar-PTM). Version: 1.13.3 Authors: Florian P Breitwieser <fbreitwieser@cemm.oeaw.ac.at>, Jacques Colinge <jcolinge@cemm.oeaw.ac.at>, with contributions from Alexey Stukalov <astukalov@gmail.com>, Xavier Robin <xavier.robin@unige.ch> and Florent Gluck <florent.gluck@unige.ch> References: Florian P. Breitwieser, André Müller, Loïc Dayon, Thomas Köcher, Alexandre Hainard, Peter Pichler, Ursula Schmidt-Erfurth, Giulio Superti-Furga, Jean-Charles Sanchez, Karl Mechtler, Keiryn L. Bennett, and Jacques Colinge (June 2011). “General statistical modeling of data from protein relative expression isobaric tags.” In: J Proteome Res 10.6, pp. 2758–2766 Florian P. Breitwieser and Jacques Colinge (Sept. 2013). “Isobar(PTM): a software tool for the quantitative analysis of post-translationally modified proteins.” eng. In: J Proteomics 90, pp. 77–84 Further Documentation: http://www.ms-isobar.org/isobar.html http://www.ms-isobar.org/isobar-ptm.html