1. interactiveDisplay
  2. Graph
Graph of interactiveDisplay
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  • 8e394ce (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:56:36 -0400;
  • b510492 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:56:36 -0400;
  • e84f1c5 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:29:27 -0400;
  • c7e9524 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:29:27 -0400;
  • bcf2964 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:08:56 -0400;
  • 43249e6 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:08:56 -0400;
  • d775ef7 add ShinyApps biocViews term by lshep <lori.shepherd@roswellpark.org> 2022-10-11 13:58:21 -0400;
  • caad575 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:16:56 +0000;
  • 0aa2456 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:16:56 +0000;
  • 87b1377 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-17 06:09:27 -0800;
  • 89ba985 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:10:45 +0000;
  • 2851932 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:10:45 +0000;
  • 3064801 moving to maintainer and bumping version and dealing with typo in bicgo by vjcitn <stvjc@channing.harvard.edu> 2021-07-30 10:20:24 -0400;
  • b2160e5 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:01:38 +0000;
  • 7c9aab4 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:01:38 +0000;
  • 1cd9437 Use GRangesList() constructor instead of defunct GenomicRangesList() by Hervé Pagès <hpages.on.github@gmail.com> 2020-11-12 21:38:25 -0800;
  • f17d140 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:53:47 -0400;
  • 55ae0c4 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:53:47 -0400;
  • 2350b54 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:37:18 +0000;
  • fd0618c (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:37:18 +0000;
  • 5d7c1e7 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:37:13 -0400;
  • 085d758 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:50 -0400;
  • 69f9fbd bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:28 -0400;
  • 7460ffb (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:46 -0400;
  • 8bd2ab4 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:32 -0400;
  • 0eec5d4 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:52 -0400;
  • a702fdb remove useDevel mention replace with BiocManager::install by LiNk-NY <mramos09@gmail.com> 2018-09-07 15:21:19 -0400;
  • 52c9c80 additional updates from BiocInstaller to BiocManager by LiNk-NY <marcel.ramosperez@roswellpark.org> 2018-09-06 15:51:43 +0000;
  • 2b1cd5f replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:50:47 -0400;
  • 20ea3a4 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
  • 0a5cc04 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:31 -0400;
  • fc440cb reserialize GRangesList instances as CompressedGRangesList instances by Hervé Pagès <hpages@fredhutch.org> 2018-02-05 08:49:23 -0800;
  • f0ea3c0 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:58 -0400;
  • b98b404 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:09 -0400;
  • 25b1710 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • aecb96c (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 78b390d bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 20ab628 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • fd6a3c1 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • b670615 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • e9a92ab (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 0cf1cfa Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • d47a061 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 895265b Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 63aa5cb bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • cf93956 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 698f10e Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 747b0da Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • c62aa2a (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 561f693 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 15a8df2 use interactiveDisplayBase::.runApp by Martin Morgan <mtmorgan@fhcrc.org> 2015-09-13 12:15:20 +0000;
  • facf745 Re-serialize (again) RangedSummarizedExperiment object included in the package in response to latest changes in RangedSummarizedExperiment internals. by Herve Pages <hpages@fhcrc.org> 2015-06-17 05:42:08 +0000;
  • ce7b516 Some tweaks in response to the SummarizedExperiment class defined in the GenomicRanges package being replaced with the RangedSummarizedExperiment class defined in the new SummarizedExperiment package: - Add new SummarizedExperiment package to Suggests field. - Replace all occurences of SummarizedExperiment and rowData with RangedSummarizedExperiment and rowRanges, respectively (except in .js files). - Re-serialize SummarizedExperiment object (se.rda) included in the package as a RangedSummarizedExperiment object. - Bump version. by Herve Pages <hpages@fhcrc.org> 2015-05-14 01:02:50 +0000;
  • e06346a Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 129c49e (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 67b872e Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 48f9bf6 (origin/RELEASE_3_0, RELEASE_3_0) Tweaking MRexperiment default settings to fix error by Joseph Paulson <jpaulson@umiacs.umd.edu> 2015-01-13 04:09:55 +0000;
  • 004452e Tweaking MRexperiment default settings by Joseph Paulson <jpaulson@umiacs.umd.edu> 2015-01-13 04:06:46 +0000;
  • b64c653 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 30a643f Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • ead2e72 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • b30a4df rstudio to Enhances: by Martin Morgan <mtmorgan@fhcrc.org> 2014-10-11 17:35:58 +0000;
  • c0dcb40 minor code clean-up by Martin Morgan <mtmorgan@fhcrc.org> 2014-10-09 13:06:10 +0000;
  • 9daae32 Speed improvement for altgr(). by Shawn Balcome <balc0022@umn.edu> 2014-09-17 09:18:19 +0000;
  • a21080d Replaced circle plot with karyogram plot. Added dynamically filled UI for coloring ranges based on metadata. by Shawn Balcome <balc0022@umn.edu> 2014-09-11 22:45:27 +0000;
  • a266a3b NAMESPACE fix. by Shawn Balcome <balc0022@umn.edu> 2014-09-11 21:46:54 +0000;
  • dfc6f85 Speed improvements, cleanup. by Shawn Balcome <balc0022@umn.edu> 2014-09-11 18:46:50 +0000;
  • 077c229 Improved returned GRanges. by Shawn Balcome <balc0022@umn.edu> 2014-09-11 18:00:36 +0000;
  • bd43853 Tweaked layout in altgr.R a bit. User can now drag/move UI panel. by Shawn Balcome <balc0022@umn.edu> 2014-09-11 07:08:52 +0000;
  • 64a5abe Modified datatables js to allow for more ranges on the page (up to 50,000). by Shawn Balcome <balc0022@umn.edu> 2014-09-10 23:02:32 +0000;
  • 02410cf Added usepackage ggbio to altgr. by Shawn Balcome <balc0022@umn.edu> 2014-09-10 20:27:18 +0000;
  • 40eb09d Added an alternate, much simpler, function for GRanges. by Shawn Balcome <balc0022@umn.edu> 2014-09-10 20:14:11 +0000;
  • 9d9fc78 SFLAG parameter is now set to false by default. Pan/Zoom functionality is no longer the default in methods besides SummarizedExperiment. This is done for performance reasons until the bottleneck is resolved. by Shawn Balcome <balc0022@umn.edu> 2014-09-09 22:07:11 +0000;
  • fcaa071 Added css prefix changes. by Shawn Balcome <balc0022@umn.edu> 2014-09-09 21:38:03 +0000;
  • 714731e Fixed prefixes in /R/. by Shawn Balcome <balc0022@umn.edu> 2014-09-09 21:30:33 +0000;
  • 953d7ea Added jquery.min.js and d3.vs.js by Shawn Balcome <balc0022@umn.edu> 2014-09-09 20:59:54 +0000;
  • c0053c6 Fixing back interactiveDisplay.R (uncommenting source) by Joseph Paulson <jpaulson@umiacs.umd.edu> 2014-09-08 22:30:17 +0000;
  • 5c584bc Cleaning up side-panel in MRexperiment by Joseph Paulson <jpaulson@umiacs.umd.edu> 2014-09-08 21:16:14 +0000;
  • fb128c3 tweak to MRexperiment.R code by Joseph Paulson <jpaulson@umiacs.umd.edu> 2014-09-08 04:24:02 +0000;
  • eadddaa Updating MRexperiment.R code by Joseph Paulson <jpaulson@umiacs.umd.edu> 2014-09-08 04:15:58 +0000;
  • 3a18377 Pulls from both resource paths of interactiveDisplayBase and interactiveDisplay now. by Shawn Balcome <balc0022@umn.edu> 2014-09-05 19:13:17 +0000;
  • 4bcf892 More build fixes. by Shawn Balcome <balc0022@umn.edu> 2014-09-04 22:24:55 +0000;
  • ec4b92b Remove html comments from vignette, add inst/www/css dir by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-09-04 21:23:48 +0000;
  • 3023f74 tidying from last commit by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-09-04 20:49:21 +0000;
  • e96be6a add VignetteEngine and VignetteIndexEntry to comment block at top by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-09-04 20:48:32 +0000;
  • 004413f dataframe.R removed from DESCRIPTION by Shawn Balcome <balc0022@umn.edu> 2014-09-04 19:59:23 +0000;
  • 588ff34 First attempt to pull out code now handled by interactiveDisplayBase. by Shawn Balcome <balc0022@umn.edu> 2014-09-04 18:52:18 +0000;
  • 85c8a6a Version Bump. by Shawn Balcome <balc0022@umn.edu> 2014-09-04 17:56:32 +0000;
  • 4b53c9e Build error fix, deleted old .Rmd. by Shawn Balcome <balc0022@umn.edu> 2014-09-04 17:47:27 +0000;
  • adf5654 Version bump. by Shawn Balcome <balc0022@umn.edu> 2014-09-03 23:15:41 +0000;
  • f545b6c First attempt to add new, detailed vigette. Likely will fail on daily build. by Shawn Balcome <balc0022@umn.edu> 2014-09-03 23:13:58 +0000;
  • a9ea5bd Added MRexperiment.R, currently only a method template. by Shawn Balcome <balc0022@umn.edu> 2014-07-12 17:33:25 +0000;
  • e04feb0 Bug fix. GenomicRanges package wasn't properly loaded in summarizedExperiment method. by Shawn Balcome <balc0022@umn.edu> 2014-05-09 03:26:40 +0000;
  • c95dd1f Significant update. Pulled out Network View from expressionSet into simplenet() (works with any dataframe). In the process, found that determining the edge slider maximum was a huge bottleneck. Fixed this in expressionSet.R by making it into textInput and if the max is exceeded, checks are in place to handle it gracefully. Passing the parameter sflag=FALSE into either display methods for ExpressionSet, GRanges or GRangesList will suppress the SVG plotting. The heatmap in the expressionSet method can now be transposed/flipped via the UI. by Shawn Balcome <balc0022@umn.edu> 2014-05-08 05:51:58 +0000;
  • c6c660d Group GO summary takes some time, so updates are now initiated with a button. by Shawn Balcome <balc0022@umn.edu> 2014-05-07 17:41:59 +0000;
  • 055c928 Color picker in expressionSet method no longer redraws the heatmap when a new color is chosen if toggled to "rainbow" mode. by Shawn Balcome <balc0022@umn.edu> 2014-05-07 07:28:00 +0000;
  • 7a48e69 Fixed Firefox bug with gridsvgjs.R() by Shawn Balcome <balc0022@umn.edu> 2014-05-06 04:41:38 +0000;
  • 8404f78 Added a little function gridtweak(). It may be removed later, but I personally find it convenient. by Shawn Balcome <balc0022@umn.edu> 2014-04-23 06:06:12 +0000;
  • 5084265 Strip out rows with NA in ExpressionSet object to prevent errors. by Shawn Balcome <balc0022@umn.edu> 2014-04-21 09:20:34 +0000;
  • 6b40322 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;