Name Mode Size
R 040000
data-raw 040000
data 040000
man 040000
tests 040000
vignettes 040000
.Rbuildignore 100644 0 kb
.gitignore 100644 1 kb
DESCRIPTION 100644 1 kb
NAMESPACE 100644 1 kb
README.Rmd 100644 2 kb 100644 5 kb
--- output: github_document --- <!-- is generated from README.Rmd. Please edit that file --> ```{r, include = FALSE} knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "man/figures/README-", out.width = "75%" ) ``` # idpr Overall, ‘idpr’ aims to integrate tools for the computational analysis of intrinsically disordered proteins within R. This package is used to identify known characteristics of IDPs within a sequence of interest with easily reported and dynamic results. Additionally, this package also includes tools for IDP-based sequence analysis to be used in conjunction with other R packages. **Please Refer to idpr-vignette.Rmd file for a detailed introduction to the** **idpr package.** Links to the vignettes found at the [Bioconductor landing page (here)]( ## Installation You can install the stable release version version from [Bioconductor]( with: ```r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("idpr") ``` You can install the development version from [Bioconductor]( with: ``` r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') ``` Or you can install the most recent development version from [GitHub]( with: ``` r # install.packages("devtools") #if not already installed devtools::install_github("wmm27/idpr") ``` ## Example This is a basic example to quickly profile your protein of interest: ```{r example} library(idpr) P53_HUMAN <- TP53Sequences[2] #Getting a pre-loaded sequence from idpr print(P53_HUMAN) P53_ID <- "P04637" #Human TP53 UniProt ID idprofile(sequence = P53_HUMAN, #Generates the Profile uniprotAccession = P53_ID) ``` **Please Refer to idpr-vignette.Rmd file for a detailed introduction to the** **idpr package.** [Link to the Vignette (here)]( ## Appendix ### Package citation ```{r} citation("idpr") ``` ### Additional Information ```{r} Sys.time() Sys.Date() R.version ```