Graph ofhipathia
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  • f4adf00 (HEAD -> master, origin/master, origin/HEAD) roxygenize new version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-12-01 14:02:29 +0100;
  • 721f54d adding package guide v3.0 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-29 17:20:29 +0100;
  • 95823e8 fixing bugs for version 3.0 and bumping to version 2.99.0 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-28 16:37:13 +0100;
  • e7c7b77 bumping version to 2.15.1 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-22 14:40:06 +0100;
  • a3456c2 Merge branch 'master' into devel by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-22 14:36:14 +0100;
  • ba8f7c5 comentando el código nuevo by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-22 14:28:58 +0100;
  • 1509b42 finishing new functions and fixing colors by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-04 13:12:21 +0100;
  • 79d5909 fixing correct Y coordinate in pathway layout in plotVG by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-03 11:11:39 +0100;
  • 5b407ad ultimando función visualización pathways, y añadiendo nueva de creación de reports (wrap) by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-11-03 11:09:54 +0100;
  • e85bbc7 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:17:38 -0400;
  • 491ab66 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:17:38 -0400;
  • c175f9f updating devel.R by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-10-28 14:09:16 +0200;
  • e375302 separating plotVG function into nodes, edges and plot by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-10-26 17:02:12 +0200;
  • c3126a8 fixing bugs, adding DAsummary pathways_summary functions by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-10-18 16:26:49 +0200;
  • 55ac48e changing hipathia structure to make uniprot and GO terms be computed inside main hipathia function and creating DApathways function, to compute all comparisons of all datasets in a single function (wrap to do_wilcoxon and do_limma) by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-10-17 16:37:40 +0200;
  • da64a0f adding devel.R file by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-10-17 11:27:38 +0200;
  • af07cc5 updating NEWS in version 2.13.1 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-07-27 14:00:04 +0200;
  • a7fdb34 bumping to version 2.13.1 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-07-27 13:58:01 +0200;
  • ed602bd acabando fusion by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-07-27 13:50:24 +0200;
  • 9a62a00 fixed bug: removing nodes with 0 variance before limma analysis by Marta Hidalgo <marta.hidalgo@outlook.es> 2022-07-26 16:16:53 +0200;
  • d064800 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:48:45 +0000;
  • db2d24b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:48:45 +0000;
  • cc154be ignoring file vignettes/hipathia-vignette.tex by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-02-15 10:22:52 +0100;
  • 7bc13b4 bumping to version 2.11.4 & ignoring file vignettes/hipathia-vignette.tex by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-02-15 10:21:34 +0100;
  • 437bb79 Merge branch 'master' of https://github.com/martahidalgo/hipathia by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-02-15 10:16:41 +0100;
  • a618f4d bumping to version 2.11.3 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-02-07 14:16:05 +0100;
  • 4777218 pulling master upstream branch, updating version to 2.11.2 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2022-02-02 13:10:29 +0100;
  • 62a25c1 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2022-01-14 12:03:17 -0500;
  • a617079 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-20 04:10:38 -0500;
  • ecdc032 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:44:06 +0000;
  • bc0e4d8 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:44:06 +0000;
  • 0b37296 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:35:11 +0000;
  • c46391b (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:35:11 +0000;
  • befbb12 Merge pull request <a href="#4">#4</a> from mialaalv/patch-1 by Marta R. Hidalgo <33629573+martahidalgo@users.noreply.github.com> 2021-05-01 14:27:37 +0200;
  • 1bece0a bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:34:44 -0400;
  • e436824 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:34:44 -0400;
  • c1c7116 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:16:04 +0000;
  • b8671a0 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:16:04 +0000;
  • 10fdbeb Correcting bug in do_limma function and bumping to version 2.3.2 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2020-01-23 15:34:07 +0100;
  • 0786086 Bumping to version 2.3.1 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-12-03 16:45:28 +0100;
  • 8c08dd9 Updating DESCRIPTION and man/ files, updating .gitignore by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-12-03 16:42:36 +0100;
  • 724be73 Merge branch 'master' of https://gitlab.com/marta.hidalgo/hipathia Merge to solve verion conflict by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-12-02 19:06:23 +0100;
  • 4e96525 (origin/RELEASE_3_10) Updating man files by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-12-02 18:37:33 +0100;
  • 8ae2354 Bumping to version 2.2.1 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-12-02 18:36:57 +0100;
  • 0430ed9 Bumping to version 2.3.0 in master branch by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-12-02 15:14:21 +0100;
  • 2692a33 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:05 -0400;
  • 308770d bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:08 -0400;
  • d30a61c Update utils.R by I. Alamo <43369953+mialaalv@users.noreply.github.com> 2019-09-04 14:34:24 +0200;
  • facf358 Bumping to version 2.1.3 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-11 15:39:45 +0200;
  • 91bf90a Debugging version 2.1.2, adding subparagraph:yes to vignettes and shortening some lines by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-10 10:35:48 +0200;
  • ede3b61 Debugging version 2.1.2, minor issue in vignette by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-07 16:52:11 +0200;
  • 6887a51 Debugging version 2.1.2 again by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-07 16:21:10 +0200;
  • 61bb2f4 Debugging version 2.1.2 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-07 16:10:19 +0200;
  • 4f0cef4 Bumping to 2.1.2 version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-07 10:54:25 +0200;
  • 6cdbafc Updating package for vignettes by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-07 10:36:45 +0200;
  • 47a198a Minor change to allow metaginfo objects previous to the introduction of BYUSER slot in these objects by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-06-06 11:55:58 +0200;
  • cccb681 Adding minor comment to vignette file by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-28 12:31:45 +0200;
  • 7987483 Adding news to NEWS file by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-28 12:17:34 +0200;
  • 9faac9c Updating mgi_from_sif function name, updating vignette to include function mgi_from_sif info, and bumping version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-17 11:39:03 +0200;
  • c142ec0 Adding inst/extdata/SIF_ATT_example folder by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-17 11:37:47 +0200;
  • 24c626c Updating version number to current devel/master version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-16 10:41:52 +0200;
  • 7a34df4 Updating code for mgi_from_sif function by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-16 10:20:11 +0200;
  • 43f62f8 Adding load_sif.R, script with all necessary functions to create a new metaginfo object from SIF and ATT files by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-06 17:48:13 +0200;
  • 94ed414 Modifying number of accepted slots in metaginfo object when testing it, to allow a new 'by.user' slot, for metaginfo objects created by the user by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-06 17:46:28 +0200;
  • 4d6d85e Modifying favicon by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-05-03 17:11:04 +0200;
  • 9e2ec64 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:15:47 -0400;
  • 98a7f3d (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:11 -0400;
  • 8eb08e9 Debugging check problems, basically because of the SummarizedExperiment, and bumping version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-17 19:47:04 +0200;
  • 5833fb4 Bumping version to 1.99.4 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-17 14:35:59 +0200;
  • dc82e7e Minor changes updating version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-17 14:34:09 +0200;
  • 84bc03c Updating example .rda data objects by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-17 14:32:50 +0200;
  • c70a1c4 Updating tests to fit new version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-17 14:31:59 +0200;
  • 44ad077 Adding favicon to pathway-viewer by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-12 16:47:31 +0200;
  • 13d0138 Bumping to version 1.99.2, so that next release will be 2.0.0 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-12 13:13:57 +0200;
  • 27ee40e Bumping to version 1.99.0, so that next release will be 2.0.0 by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-12 13:13:10 +0200;
  • 410d73f Updating NEWS file by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-12 12:58:09 +0200;
  • ffc9f8e Adapting package to metaginfo objects including the group.by slot by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-04-11 16:45:24 +0200;
  • 4c4443a Adding 'decomposed' parameter to hipathia results by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-27 09:20:19 +0100;
  • 03a0669 Fixing bug in metabolites tooltip by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-26 17:29:18 +0100;
  • 21a69a5 Restricting all GO functions to 50 characters by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-25 09:57:32 +0100;
  • 3af9adb Fixing bug from previous commit by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-22 15:02:47 +0100;
  • 71353ce Adapting load.R to new RData names in AnnotationHub, which include the version number by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-22 14:48:56 +0100;
  • d7d2b57 Updating data/ files and ading a space in functions.R file by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-21 19:08:07 +0100;
  • c54a24d Adding news about GO Identifyers in version 1.5.1 to NEWS file by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-21 16:54:16 +0100;
  • e41275a Bumping version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-21 16:40:24 +0100;
  • b4966e5 Adding new man files by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-21 16:07:50 +0100;
  • fec58ce Fixing bugs and man files by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-21 16:07:11 +0100;
  • 2aa059c Introducing function color_node, which returns the colors of the nodes from the file of a external comparison. Now, color_nodes_per_de function just calls to do_limma and node_colors by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-21 11:03:36 +0100;
  • 0594c45 Chanigng node_color_per_de & compute_difep functions to admit different experimental designs, and adding do_limma function by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-20 17:04:54 +0100;
  • 1df7605 Adapting code for GO annotations change in hpConstructor (before: GO function anmes, now: GO IDs) by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-20 09:05:34 +0100;
  • 6296d69 (origin/RELEASE_3_8, RELEASE_3_8) Fixing DESCRIPTION merge conflict by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-02-06 14:32:01 +0100;
  • de4ab53 Fixed version numbers. Only increment 'z'. by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-01-30 12:20:23 -0500;
  • 4f9d7ff Bump version 'y' to fix version number. by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-01-30 12:18:19 -0500;
  • ff23aa8 Bump version 'y' to fix version number. by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-01-30 12:12:52 -0500;
  • 36a6fb3 Merge branch 'master' of https://gitlab.com/marta.hidalgo/hipathia by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-01-29 16:57:19 +0100;
  • 6e23681 Fixing bug in Wilcoxon and bumping version II by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-01-29 16:56:03 +0100;
  • fe2ea41 Bumping version by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-01-29 15:25:16 +0100;
  • d93efc9 Fixing bug in Wilcoxon test by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2019-01-29 15:13:53 +0100;
  • bd245a5 fixing version number in NEWS file by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2018-12-17 11:15:48 +0100;
  • bdfe551 fixing version number after merging by Marta R. Hidalgo <marta.hidalgo@outlook.es> 2018-12-17 11:14:39 +0100;