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  • 0e43e46 (origin/RELEASE_3_15, RELEASE_3_15) version bump by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-05-05 10:00:27 +0200;
  • 8a69cdc update news by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-05-05 09:59:15 +0200;
  • 8a27b23 fix test inconsistencies by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-05-05 09:58:48 +0200;
  • 4cd7e76 fix checkmate errors by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-05-05 09:58:22 +0200;
  • 8a4abf5 (HEAD -> master, origin/master, origin/HEAD) version bump by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-05-05 09:55:30 +0200;
  • 8961e8b update news by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-05-05 09:53:34 +0200;
  • a4c510c fix size test inconsistencies by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-05-05 09:38:33 +0200;
  • 93a0a10 fix checkmate errors and apply styling by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2022-04-27 09:55:48 +0200;
  • b23c785 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:20:16 +0000;
  • 6e61836 bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:20:16 +0000;
  • b43d4dc avoid vignette problem by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-12-07 20:15:34 +0100;
  • b5263ee Merge branch 'correct_authors@master' by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-12-06 16:42:51 +0100;
  • 64d4576 correct authors by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-12-06 16:41:50 +0100;
  • 02e1817 Merge branch '155_bioc_review@master' by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-16 11:38:44 +0100;
  • c2f142e snaps updates by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-16 11:38:37 +0100;
  • f9f0744 don't suppress warnings from `lmFit` by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-16 11:27:56 +0100;
  • eac3345 update github README file by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-16 10:59:35 +0100;
  • caae082 address most simple comments by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-16 10:58:08 +0100;
  • 14173be Merge branch '151_fix_build_issues@master' by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-02 17:26:24 +0100;
  • cd8da67 skip conn tests on BioC by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-02 17:21:39 +0100;
  • 0020ec8 version and date bumps by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-02 17:18:30 +0100;
  • b802334 remove .Rhistory by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-02 17:17:20 +0100;
  • 3d431fa remove Rproj file by Daniel Sabanes Bove <daniel.sabanes_bove@roche.com> 2021-11-02 17:15:55 +0100;
  • 391e8b9 149: add version requirement for `ggrepel` so we have `max.overlaps` (#150) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-11-01 14:41:01 +0100;
  • 0fab688 Add spelling check (#148) by tomszosz <42359321+tomszosz@users.noreply.github.com> 2021-10-29 16:33:18 +0200;
  • c6e2b18 143: Fix BioConductor check problems (#147) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-29 08:47:22 +0200;
  • c7a1062 Disable auto version bumps (#144) by Dinakar <26552821+dinakar29@users.noreply.github.com> 2021-10-27 11:26:46 -0500;
  • 9134763 initial commit (#141) by Tomasz Woźniak <tomlee@cybertronika.eu> 2021-10-27 12:24:26 +0200;
  • dc885a5 add email (#142) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-27 10:06:07 +0200;
  • 4fd7322 final cleanup before open sourcing (#139) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-26 20:38:10 +0200;
  • 138d694 Fix changelog not produced correctly on release (#140) by Dave <13086223+knightdave@users.noreply.github.com> 2021-10-26 14:30:26 +0200;
  • 10cbc90 118 Remove/fill in randomly patient data from example datasets (#137) by b_falquet <64274616+BFalquet@users.noreply.github.com> 2021-10-25 16:31:15 +0200;
  • d836f7b Migrate staged.dependencies to action (#138) by Dave <13086223+knightdave@users.noreply.github.com> 2021-10-25 14:37:46 +0200;
  • 65d7286 7: Test plot functions with `vdiffr` (#136) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-25 13:49:16 +0200;
  • 0a0a64d 120: add code for hermes_explicit_na (#135) by colinisstudent <87772156+colinisstudent@users.noreply.github.com> 2021-10-25 05:09:08 -0400;
  • 3776ca9 119: replace `tern` assertions (#129) by Jeff Luong <87994544+luongj3@users.noreply.github.com> 2021-10-22 11:09:42 -0400;
  • 4d7e570 120: add a design file for the replacement of df_explicit_na (#130) by colinisstudent <87772156+colinisstudent@users.noreply.github.com> 2021-10-21 23:18:45 -0400;
  • 20c3b0e cat_with_newline function (#127) by Stefanie Bienert <75780729+bienerts@users.noreply.github.com> 2021-10-21 18:33:21 +0200;
  • 8770432 fix cut_quantile (rounding issues, additional tests, works with 1 x) (#133) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-21 15:03:31 +0200;
  • aac52ed 122: replace `utils.nest` functions with `checkmate` functions or others (#131) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-20 21:44:09 +0200;
  • 7eadd6d 121 Replace `tern::cut_quantile_bins` with a simpler `hermes` function (#125) by b_falquet <64274616+BFalquet@users.noreply.github.com> 2021-10-20 12:17:33 +0200;
  • eb23658 sessionInfo in the R CMD CHECK (#128) by arkadiuszbeer <86738093+arkadiuszbeer@users.noreply.github.com> 2021-10-19 22:09:53 +0200;
  • 39284f0 Slim linter (#124) by Dinakar <26552821+dinakar29@users.noreply.github.com> 2021-10-14 11:14:30 -0500;
  • 9361c6d Bump version by dinakar29 <26552821+dinakar29@users.noreply.github.com> 2021-10-12 20:02:35 -0500;
  • eaed2c8 116: sanitize error message from vst (#117) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-12 10:54:42 +0200;
  • 4f533f8 114: remove vdiffr (#115) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-12 10:36:28 +0200;
  • a9dc49b 112: support duplicate gene symbols in GeneSpec (#113) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-11 22:20:13 +0200;
  • 3c46062 109: use different dodge width for violin plot to align points (#111) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-10 20:45:15 +0200;
  • 7ec6217 106: clean news, fix tech flags, add tests for other flags (#110) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-10 15:39:08 +0200;
  • 3b090c9 Add sets for TESTING_DEPTH (#107) by Tomasz Woźniak <tomlee@cybertronika.eu> 2021-10-09 14:57:23 +0200;
  • b908822 minor updates to news (#108) by namratabhatia <53239049+namratabhatia@users.noreply.github.com> 2021-10-08 07:56:59 -0700;
  • b05497f 101: make sure $extract*() give back correctly named results (#103) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-07 21:22:02 +0200;
  • d586290 Update staged.dependencies version to v0.2.2 (#105) by Dinakar <26552821+dinakar29@users.noreply.github.com> 2021-10-07 11:00:54 -0500;
  • ef751c4 Use main branch for release (#102) by Dave <13086223+knightdave@users.noreply.github.com> 2021-10-07 11:50:30 +0200;
  • 3fe0ec1 'Add release automation and coverage' (#99) by Dave <13086223+knightdave@users.noreply.github.com> 2021-10-07 10:41:14 +0200;
  • f792ac9 98: add joining functions to hermes (#100) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-07 09:58:36 +0200;
  • 2b79b7e DelayedMatrix assays now get converted to matrix/array (#96) by Tim Treis <tim.treis@roche.com> 2021-10-05 11:50:01 +0200;
  • 802de76 94: fix connections to BioMart (#95) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-01 16:26:33 +0200;
  • 8c47dba 89: add single function imports to avoid note (#93) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-10-01 15:29:18 +0200;
  • 7b082d2 news (#92) by Pawel Rucki <pawel.rucki@roche.com> 2021-10-01 10:24:34 +0200;
  • 5765db8 64: query correct gene size from biomaRt (#86) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-30 16:20:03 +0200;
  • 7d2eb24 119: add isEmpty method for SEs (#91) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-30 09:33:27 +0200;
  • 05e2cfb Remove no-manual in check (#90) by Nikolas Burkoff <nikolas.burkoff@roche.com> 2021-09-29 20:31:27 +0100;
  • 2b11f1c 66: add lapply method for MAE (#87) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-28 23:05:41 +0200;
  • 2c07f9f 65: Check h_pca_var_rsquared() (#88) by Jeff Luong <87994544+luongj3@users.noreply.github.com> 2021-09-28 13:03:26 -0400;
  • ee924b5 upgrade version by Pawel <pawelrucki@gmail.com> 2021-09-27 10:01:23 +0200;
  • 3c1b6d1 Enhance CI workflows (#84) by Dinakar <26552821+dinakar29@users.noreply.github.com> 2021-09-25 08:45:10 -0500;
  • cf73b73 88: Update draw_plot function to accommodate the changes in teal module (#82) by colinisstudent <87772156+colinisstudent@users.noreply.github.com> 2021-09-24 11:35:50 -0400;
  • 0e5afd1 67: Wrap in MAE function (#81) by Jeff Luong <87994544+luongj3@users.noreply.github.com> 2021-09-24 11:04:11 -0400;
  • d624bb8 32: add rename method for SEs (#80) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-23 17:04:11 +0200;
  • 07b083d 37: mae improved (#77) by namratabhatia <53239049+namratabhatia@users.noreply.github.com> 2021-09-22 02:10:56 -0700;
  • 1aea053 32: Design for mapping of names. (#76) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-22 10:07:38 +0200;
  • 5a6df52 74 87: clean_up_barplot@main (#75) by b_falquet <64274616+BFalquet@users.noreply.github.com> 2021-09-21 21:00:30 +0200;
  • cd64289 Using minimal gitlab job set (#73) by arkadiuszbeer <86738093+arkadiuszbeer@users.noreply.github.com> 2021-09-20 13:10:25 +0200;
  • a5026f2 Add lychee and pkgdown workflows (#69) by Insights Engineering Bot <68416928+insights-engineering-bot@users.noreply.github.com> 2021-09-18 18:38:06 +0200;
  • d1fca51 Added violin plot as an option to `draw_boxplot()` (#71) by Tim Treis <tim.treis@roche.com> 2021-09-17 20:45:57 +0200;
  • 93e3112 70: `is_constant(x)` works now for factors `x` (#72) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-17 18:02:50 +0200;
  • 6d249ef 31 change names to standardised specs@main (#63) by Tim Treis <tim.treis@roche.com> 2021-09-16 15:05:42 +0200;
  • f07df2d 59 rename df char fun@main (#62) by Lyndsee Z <39424598+codesformochi@users.noreply.github.com> 2021-09-16 02:52:21 -0500;
  • 5813692 Adding gitlab pipeline (#61) by arkadiuszbeer <86738093+arkadiuszbeer@users.noreply.github.com> 2021-09-14 17:36:03 +0200;
  • ff0e136 58: replace `|>` by `%>%` so it can run on BEE (#60) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-14 09:24:44 +0200;
  • 79cbd16 55: Make `filter` usable on data frame etc. after loading `hermes` (#57) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-13 11:34:42 +0200;
  • 42601cd activate cyclocomp lintr (#56) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-09-10 11:52:09 +0200;
  • ef8323f ci: removed unneeded importFrom statements (#53) by Konrad Pagacz <konrad.pagacz@contractors.roche.com> 2021-09-10 08:24:54 +0200;
  • c868ede 42 add additional gene summary functions (#52) by b_falquet <64274616+BFalquet@users.noreply.github.com> 2021-09-07 21:38:32 +0200;
  • d315caa update for stage deps v0.2 (#51) by Nikolas Burkoff <nikolas.burkoff@roche.com> 2021-09-06 14:51:52 +0100;
  • 9a5cf3e Updating workflow to use fixed version of staged.deps (#50) by Nikolas Burkoff <nikolas.burkoff@roche.com> 2021-09-06 13:46:48 +0100;
  • 43e1071 47: Revise test files to remove error message (#49) by colinisstudent <87772156+colinisstudent@users.noreply.github.com> 2021-09-03 06:39:16 -0400;
  • 80947b2 Update license to Apache 2 (#48) by Insights Engineering Bot <68416928+insights-engineering-bot@users.noreply.github.com> 2021-09-01 03:42:43 +0200;
  • 08fee66 ci(.lintr): drop object_usage_linter (#45) by Konrad Pagacz <konrad.pagacz@contractors.roche.com> 2021-08-31 16:07:28 +0200;
  • 4aeafca 20: Gene spec class and scatterplot adaptation. (#40) by Daniel Sabanes Bove <danielinteractive@users.noreply.github.com> 2021-08-31 14:49:52 +0200;
  • e5a8087 ci(linting): added error_on_lint: TRUE to .lintr (#44) by Konrad Pagacz <konrad.pagacz@contractors.roche.com> 2021-08-31 04:19:43 +0200;
  • 1f20264 21 update normalize() function (#39) by colinisstudent <87772156+colinisstudent@users.noreply.github.com> 2021-08-28 18:51:03 -0400;
  • 3a8ab7d add filter function to pca and tests (#41) by Stefanie Bienert <75780729+bienerts@users.noreply.github.com> 2021-08-27 13:03:44 +0200;
  • 50a6580 skip_if_too_deep inside all test_that (#34) by Junlue Zhao <jzhao31415@gmail.com> 2021-08-26 08:08:35 -0500;
  • 46b1d32 PR design pca filter (#36) by Stefanie Bienert <75780729+bienerts@users.noreply.github.com> 2021-08-24 16:34:36 +0200;
  • 19787a3 21: Design for transformation (#35) by colinisstudent <87772156+colinisstudent@users.noreply.github.com> 2021-08-24 06:20:46 -0400;
  • cae97ff Update linter.yaml (#33) by Dave <13086223+knightdave@users.noreply.github.com> 2021-08-19 20:45:53 +0200;
  • 47b5a07 20: boxplot update to the the ability to specify multiple genes (#28) by namratabhatia <53239049+namratabhatia@users.noreply.github.com> 2021-08-19 06:05:24 -0700;
  • 633d196 rbuildignore - dot to escaped dot (#30) by Polkas <nasinski.maciej@gmail.com> 2021-08-19 12:34:58 +0200;