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README.Rmd
--- output: github_document --- <!-- README.md is generated from README.Rmd. Please edit that file --> ```{r, echo = FALSE} knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "README-" ) ``` [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) \ # hermes <p align="center"> <img src='man/figures/logo.png' align="right" height="131.5" alt="hermes-logo"/> </p> > `hermes` facilitates preprocessing, analyzing, and reporting of RNA-seq data. * Imports RNAseq count data into the `hermes` ready format. * Annotates gene information automatically from a central database (e.g. BioMart). * Adds quality control (QC) flags to genes and samples. * Filters the data set. * Normalizes the counts. * Quickly produces descriptive plots. * Performs principal components analysis. * Produces a templated QC report. * Performs differential expression analysis. ## Installation ### BioConductor You can install the current release from BioConductor with: ```{r bioc-installation, eval = FALSE} # install.packages("BiocManager") BiocManager::install("hermes") ``` ### GitHub You can install the development version from GitHub with: ```{r gh-installation, eval = FALSE} # install.packages("devtools") devtools::install_github("insightsengineering/hermes") ``` ## Getting Started You can get started by reading the introduction vignette: ```{r vignette-start, eval = FALSE} library(hermes) vignette("introduction", package = "hermes") ```