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README
Usage: bam_singlemap -d <genome> <bam> | samtools view -Sb - > <new bam> bam_tally -d <genome> <bam> bam_gstruct -d <genome> <bam> | iit_store -o <pred> bam_print -d <genome> -m <genes>,<pred> <bam> <coords> genecompare -d <genome> -m <genes> <pred.iit> > x, or genecompare <goldstd.iit> <pred.iit> > x Depends on samtools and gmap packages. gfusion depends on gmap and qsub