Name | Mode | Size |
---|---|---|
.. | ||
Makefile.am | 100644 | 4 kb |
Makefile.in | 100644 | 146 kb |
access.c | 100644 | 11 kb |
access.h | 100644 | 2 kb |
add-exons-spliced.c | 100644 | 35 kb |
add-exons-unpaired.c | 100644 | 47 kb |
add-splice-prob.c | 100644 | 6 kb |
assert.c | 100644 | 0 kb |
assert.h | 100644 | 0 kb |
bam.h | 100644 | 24 kb |
bam_indelfix.c | 100644 | 17 kb |
bam_markdups.c | 100644 | 29 kb |
bam_merge.c | 100644 | 11 kb |
bam_pileup.c | 100644 | 27 kb |
bam_print.c | 100644 | 62 kb |
bam_splices.c | 100644 | 15 kb |
bamread.c | 100644 | 83 kb |
bamread.h | 100644 | 7 kb |
bamtally.c | 100644 | 242 kb |
bamtally.h | 100644 | 3 kb |
bamtally_main.c | 100644 | 25 kb |
bgzf.h | 100644 | 5 kb |
bigendian.c | 100644 | 17 kb |
bigendian.h | 100644 | 2 kb |
bool.h | 100644 | 0 kb |
cappaths.c | 100644 | 9 kb |
cappaths.h | 100644 | 1 kb |
chrnum.c | 100644 | 2 kb |
chrnum.h | 100644 | 1 kb |
chrom.c | 100644 | 6 kb |
chrom.h | 100644 | 1 kb |
complement.h | 100644 | 2 kb |
config.h.in | 100644 | 8 kb |
datadir.c | 100644 | 11 kb |
datadir.h | 100644 | 1 kb |
dynprog.h | 100644 | 5 kb |
dynprog_cigar.c | 100644 | 28 kb |
dynprog_cigar.h | 100644 | 2 kb |
dynprog_nogap.h | 100644 | 1 kb |
dynprog_simd.h | 100644 | 1 kb |
dynprog_single.h | 100644 | 1 kb |
except.c | 100644 | 3 kb |
except.h | 100644 | 2 kb |
exon-exon-junctions.c | 100644 | 114 kb |
extract-concordant.c | 100644 | 33 kb |
find-intertranscript-regions.c | 100644 | 21 kb |
fopen.h | 100644 | 1 kb |
genecompare.c | 100644 | 43 kb |
genome.c | 100644 | 49 kb |
genome.h | 100644 | 2 kb |
genomicpos.c | 100644 | 1 kb |
genomicpos.h | 100644 | 0 kb |
getopt.c | 100644 | 33 kb |
getopt.h | 100644 | 6 kb |
getopt1.c | 100644 | 5 kb |
gsnap_splices.c | 100644 | 41 kb |
gstruct.c | 100644 | 81 kb |
gstruct.h | 100644 | 2 kb |
gstruct_main.c | 100644 | 29 kb |
iit-read.c | 100644 | 159 kb |
iit-read.h | 100644 | 7 kb |
iit-write.c | 100644 | 41 kb |
iit-write.h | 100644 | 1 kb |
iitdef.h | 100644 | 3 kb |
indelfix.c | 100644 | 45 kb |
indelfix.h | 100644 | 1 kb |
interval.c | 100644 | 7 kb |
interval.h | 100644 | 2 kb |
intlist.c | 100644 | 8 kb |
intlist.h | 100644 | 1 kb |
intlistdef.h | 100644 | 0 kb |
list.c | 100644 | 5 kb |
list.h | 100644 | 1 kb |
listdef.h | 100644 | 0 kb |
littleendian.c | 100644 | 0 kb |
littleendian.h | 100644 | 1 kb |
matchdef.h | 100644 | 0 kb |
matchpool.c | 100644 | 5 kb |
matchpool.h | 100644 | 1 kb |
maxent_hr.c | 100644 | 2,989 kb |
maxent_hr.h | 100644 | 0 kb |
md5.c | 100644 | 8 kb |
md5.h | 100644 | 0 kb |
mem.c | 100644 | 25 kb |
mem.h | 100644 | 4 kb |
mismatchdef.h | 100644 | 0 kb |
mismatchpool.c | 100644 | 5 kb |
mismatchpool.h | 100644 | 1 kb |
multimap.h | 100644 | 0 kb |
oligoindex.c | 100644 | 9 kb |
oligoindex.h | 100644 | 0 kb |
parserange.c | 100644 | 22 kb |
parserange.h | 100644 | 1 kb |
sam_splices.c | 100644 | 60 kb |
samflags.h | 100644 | 2 kb |
samread.c | 100644 | 27 kb |
samread.h | 100644 | 2 kb |
sequence.c | 100644 | 35 kb |
sequence.h | 100644 | 2 kb |
singlemap.c | 100644 | 17 kb |
splice.c | 100644 | 33 kb |
splice.h | 100644 | 3 kb |
spliceclean.c | 100644 | 60 kb |
splicegraph.c | 100644 | 215 kb |
splicegraph.h | 100644 | 2 kb |
stopwatch.c | 100644 | 1 kb |
stopwatch.h | 100644 | 0 kb |
table.c | 100644 | 6 kb |
table.h | 100644 | 1 kb |
tableint.c | 100644 | 5 kb |
tableint.h | 100644 | 1 kb |
tableuint.c | 100644 | 5 kb |
tableuint.h | 100644 | 1 kb |
tally.c | 100644 | 28 kb |
tally.h | 100644 | 6 kb |
tally.old.c | 100644 | 36 kb |
tally.old.h | 100644 | 5 kb |
translation.c | 100644 | 22 kb |
translation.h | 100644 | 1 kb |
types.h | 100644 | 0 kb |
ucharlist.c | 100644 | 3 kb |
ucharlist.h | 100644 | 1 kb |
uintlist.c | 100644 | 4 kb |
uintlist.h | 100644 | 1 kb |
uinttable.c | 100644 | 5 kb |
uinttable.h | 100644 | 1 kb |