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Decoupling the bam tallying from summarization. Soon, we will return an IIT, which can be summarized in various ways. Currently, the only way is the variant summary.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@69806 bc3139a8-67e5-0310-9ffc-ced21a209358

Michael Lawrence authored on 25/09/2012 16:00:17
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+#ifndef IIT_H
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+#define IIT_H
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+
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+#include <gstruct/iit-read.h>
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+#include <Rinternals.h>
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+
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+SEXP R_IIT_new(IIT_T iit);
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+
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+#endif