git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@123972 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -3,7 +3,7 @@ |
3 | 3 |
|
4 | 4 |
scriptversion=2012-10-14.11; # UTC |
5 | 5 |
|
6 |
-# Copyright (C) 1999-2013 Free Software Foundation, Inc. |
|
6 |
+# Copyright (C) 1999-2014 Free Software Foundation, Inc. |
|
7 | 7 |
# Written by Tom Tromey <tromey@cygnus.com>. |
8 | 8 |
# |
9 | 9 |
# This program is free software; you can redistribute it and/or modify |
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@110039 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -1,9 +1,9 @@ |
1 | 1 |
#! /bin/sh |
2 |
-# Wrapper for compilers which do not understand `-c -o'. |
|
2 |
+# Wrapper for compilers which do not understand '-c -o'. |
|
3 | 3 |
|
4 |
-scriptversion=2005-05-14.22 |
|
4 |
+scriptversion=2012-10-14.11; # UTC |
|
5 | 5 |
|
6 |
-# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc. |
|
6 |
+# Copyright (C) 1999-2013 Free Software Foundation, Inc. |
|
7 | 7 |
# Written by Tom Tromey <tromey@cygnus.com>. |
8 | 8 |
# |
9 | 9 |
# This program is free software; you can redistribute it and/or modify |
... | ... |
@@ -17,8 +17,7 @@ scriptversion=2005-05-14.22 |
17 | 17 |
# GNU General Public License for more details. |
18 | 18 |
# |
19 | 19 |
# You should have received a copy of the GNU General Public License |
20 |
-# along with this program; if not, write to the Free Software |
|
21 |
-# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. |
|
20 |
+# along with this program. If not, see <http://www.gnu.org/licenses/>. |
|
22 | 21 |
|
23 | 22 |
# As a special exception to the GNU General Public License, if you |
24 | 23 |
# distribute this file as part of a program that contains a |
... | ... |
@@ -29,21 +28,224 @@ scriptversion=2005-05-14.22 |
29 | 28 |
# bugs to <bug-automake@gnu.org> or send patches to |
30 | 29 |
# <automake-patches@gnu.org>. |
31 | 30 |
|
31 |
+nl=' |
|
32 |
+' |
|
33 |
+ |
|
34 |
+# We need space, tab and new line, in precisely that order. Quoting is |
|
35 |
+# there to prevent tools from complaining about whitespace usage. |
|
36 |
+IFS=" "" $nl" |
|
37 |
+ |
|
38 |
+file_conv= |
|
39 |
+ |
|
40 |
+# func_file_conv build_file lazy |
|
41 |
+# Convert a $build file to $host form and store it in $file |
|
42 |
+# Currently only supports Windows hosts. If the determined conversion |
|
43 |
+# type is listed in (the comma separated) LAZY, no conversion will |
|
44 |
+# take place. |
|
45 |
+func_file_conv () |
|
46 |
+{ |
|
47 |
+ file=$1 |
|
48 |
+ case $file in |
|
49 |
+ / | /[!/]*) # absolute file, and not a UNC file |
|
50 |
+ if test -z "$file_conv"; then |
|
51 |
+ # lazily determine how to convert abs files |
|
52 |
+ case `uname -s` in |
|
53 |
+ MINGW*) |
|
54 |
+ file_conv=mingw |
|
55 |
+ ;; |
|
56 |
+ CYGWIN*) |
|
57 |
+ file_conv=cygwin |
|
58 |
+ ;; |
|
59 |
+ *) |
|
60 |
+ file_conv=wine |
|
61 |
+ ;; |
|
62 |
+ esac |
|
63 |
+ fi |
|
64 |
+ case $file_conv/,$2, in |
|
65 |
+ *,$file_conv,*) |
|
66 |
+ ;; |
|
67 |
+ mingw/*) |
|
68 |
+ file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'` |
|
69 |
+ ;; |
|
70 |
+ cygwin/*) |
|
71 |
+ file=`cygpath -m "$file" || echo "$file"` |
|
72 |
+ ;; |
|
73 |
+ wine/*) |
|
74 |
+ file=`winepath -w "$file" || echo "$file"` |
|
75 |
+ ;; |
|
76 |
+ esac |
|
77 |
+ ;; |
|
78 |
+ esac |
|
79 |
+} |
|
80 |
+ |
|
81 |
+# func_cl_dashL linkdir |
|
82 |
+# Make cl look for libraries in LINKDIR |
|
83 |
+func_cl_dashL () |
|
84 |
+{ |
|
85 |
+ func_file_conv "$1" |
|
86 |
+ if test -z "$lib_path"; then |
|
87 |
+ lib_path=$file |
|
88 |
+ else |
|
89 |
+ lib_path="$lib_path;$file" |
|
90 |
+ fi |
|
91 |
+ linker_opts="$linker_opts -LIBPATH:$file" |
|
92 |
+} |
|
93 |
+ |
|
94 |
+# func_cl_dashl library |
|
95 |
+# Do a library search-path lookup for cl |
|
96 |
+func_cl_dashl () |
|
97 |
+{ |
|
98 |
+ lib=$1 |
|
99 |
+ found=no |
|
100 |
+ save_IFS=$IFS |
|
101 |
+ IFS=';' |
|
102 |
+ for dir in $lib_path $LIB |
|
103 |
+ do |
|
104 |
+ IFS=$save_IFS |
|
105 |
+ if $shared && test -f "$dir/$lib.dll.lib"; then |
|
106 |
+ found=yes |
|
107 |
+ lib=$dir/$lib.dll.lib |
|
108 |
+ break |
|
109 |
+ fi |
|
110 |
+ if test -f "$dir/$lib.lib"; then |
|
111 |
+ found=yes |
|
112 |
+ lib=$dir/$lib.lib |
|
113 |
+ break |
|
114 |
+ fi |
|
115 |
+ if test -f "$dir/lib$lib.a"; then |
|
116 |
+ found=yes |
|
117 |
+ lib=$dir/lib$lib.a |
|
118 |
+ break |
|
119 |
+ fi |
|
120 |
+ done |
|
121 |
+ IFS=$save_IFS |
|
122 |
+ |
|
123 |
+ if test "$found" != yes; then |
|
124 |
+ lib=$lib.lib |
|
125 |
+ fi |
|
126 |
+} |
|
127 |
+ |
|
128 |
+# func_cl_wrapper cl arg... |
|
129 |
+# Adjust compile command to suit cl |
|
130 |
+func_cl_wrapper () |
|
131 |
+{ |
|
132 |
+ # Assume a capable shell |
|
133 |
+ lib_path= |
|
134 |
+ shared=: |
|
135 |
+ linker_opts= |
|
136 |
+ for arg |
|
137 |
+ do |
|
138 |
+ if test -n "$eat"; then |
|
139 |
+ eat= |
|
140 |
+ else |
|
141 |
+ case $1 in |
|
142 |
+ -o) |
|
143 |
+ # configure might choose to run compile as 'compile cc -o foo foo.c'. |
|
144 |
+ eat=1 |
|
145 |
+ case $2 in |
|
146 |
+ *.o | *.[oO][bB][jJ]) |
|
147 |
+ func_file_conv "$2" |
|
148 |
+ set x "$@" -Fo"$file" |
|
149 |
+ shift |
|
150 |
+ ;; |
|
151 |
+ *) |
|
152 |
+ func_file_conv "$2" |
|
153 |
+ set x "$@" -Fe"$file" |
|
154 |
+ shift |
|
155 |
+ ;; |
|
156 |
+ esac |
|
157 |
+ ;; |
|
158 |
+ -I) |
|
159 |
+ eat=1 |
|
160 |
+ func_file_conv "$2" mingw |
|
161 |
+ set x "$@" -I"$file" |
|
162 |
+ shift |
|
163 |
+ ;; |
|
164 |
+ -I*) |
|
165 |
+ func_file_conv "${1#-I}" mingw |
|
166 |
+ set x "$@" -I"$file" |
|
167 |
+ shift |
|
168 |
+ ;; |
|
169 |
+ -l) |
|
170 |
+ eat=1 |
|
171 |
+ func_cl_dashl "$2" |
|
172 |
+ set x "$@" "$lib" |
|
173 |
+ shift |
|
174 |
+ ;; |
|
175 |
+ -l*) |
|
176 |
+ func_cl_dashl "${1#-l}" |
|
177 |
+ set x "$@" "$lib" |
|
178 |
+ shift |
|
179 |
+ ;; |
|
180 |
+ -L) |
|
181 |
+ eat=1 |
|
182 |
+ func_cl_dashL "$2" |
|
183 |
+ ;; |
|
184 |
+ -L*) |
|
185 |
+ func_cl_dashL "${1#-L}" |
|
186 |
+ ;; |
|
187 |
+ -static) |
|
188 |
+ shared=false |
|
189 |
+ ;; |
|
190 |
+ -Wl,*) |
|
191 |
+ arg=${1#-Wl,} |
|
192 |
+ save_ifs="$IFS"; IFS=',' |
|
193 |
+ for flag in $arg; do |
|
194 |
+ IFS="$save_ifs" |
|
195 |
+ linker_opts="$linker_opts $flag" |
|
196 |
+ done |
|
197 |
+ IFS="$save_ifs" |
|
198 |
+ ;; |
|
199 |
+ -Xlinker) |
|
200 |
+ eat=1 |
|
201 |
+ linker_opts="$linker_opts $2" |
|
202 |
+ ;; |
|
203 |
+ -*) |
|
204 |
+ set x "$@" "$1" |
|
205 |
+ shift |
|
206 |
+ ;; |
|
207 |
+ *.cc | *.CC | *.cxx | *.CXX | *.[cC]++) |
|
208 |
+ func_file_conv "$1" |
|
209 |
+ set x "$@" -Tp"$file" |
|
210 |
+ shift |
|
211 |
+ ;; |
|
212 |
+ *.c | *.cpp | *.CPP | *.lib | *.LIB | *.Lib | *.OBJ | *.obj | *.[oO]) |
|
213 |
+ func_file_conv "$1" mingw |
|
214 |
+ set x "$@" "$file" |
|
215 |
+ shift |
|
216 |
+ ;; |
|
217 |
+ *) |
|
218 |
+ set x "$@" "$1" |
|
219 |
+ shift |
|
220 |
+ ;; |
|
221 |
+ esac |
|
222 |
+ fi |
|
223 |
+ shift |
|
224 |
+ done |
|
225 |
+ if test -n "$linker_opts"; then |
|
226 |
+ linker_opts="-link$linker_opts" |
|
227 |
+ fi |
|
228 |
+ exec "$@" $linker_opts |
|
229 |
+ exit 1 |
|
230 |
+} |
|
231 |
+ |
|
232 |
+eat= |
|
233 |
+ |
|
32 | 234 |
case $1 in |
33 | 235 |
'') |
34 |
- echo "$0: No command. Try \`$0 --help' for more information." 1>&2 |
|
236 |
+ echo "$0: No command. Try '$0 --help' for more information." 1>&2 |
|
35 | 237 |
exit 1; |
36 | 238 |
;; |
37 | 239 |
-h | --h*) |
38 | 240 |
cat <<\EOF |
39 | 241 |
Usage: compile [--help] [--version] PROGRAM [ARGS] |
40 | 242 |
|
41 |
-Wrapper for compilers which do not understand `-c -o'. |
|
42 |
-Remove `-o dest.o' from ARGS, run PROGRAM with the remaining |
|
243 |
+Wrapper for compilers which do not understand '-c -o'. |
|
244 |
+Remove '-o dest.o' from ARGS, run PROGRAM with the remaining |
|
43 | 245 |
arguments, and rename the output as expected. |
44 | 246 |
|
45 | 247 |
If you are trying to build a whole package this is not the |
46 |
-right script to run: please start by reading the file `INSTALL'. |
|
248 |
+right script to run: please start by reading the file 'INSTALL'. |
|
47 | 249 |
|
48 | 250 |
Report bugs to <bug-automake@gnu.org>. |
49 | 251 |
EOF |
... | ... |
@@ -53,11 +255,13 @@ EOF |
53 | 255 |
echo "compile $scriptversion" |
54 | 256 |
exit $? |
55 | 257 |
;; |
258 |
+ cl | *[/\\]cl | cl.exe | *[/\\]cl.exe ) |
|
259 |
+ func_cl_wrapper "$@" # Doesn't return... |
|
260 |
+ ;; |
|
56 | 261 |
esac |
57 | 262 |
|
58 | 263 |
ofile= |
59 | 264 |
cfile= |
60 |
-eat= |
|
61 | 265 |
|
62 | 266 |
for arg |
63 | 267 |
do |
... | ... |
@@ -66,8 +270,8 @@ do |
66 | 270 |
else |
67 | 271 |
case $1 in |
68 | 272 |
-o) |
69 |
- # configure might choose to run compile as `compile cc -o foo foo.c'. |
|
70 |
- # So we strip `-o arg' only if arg is an object. |
|
273 |
+ # configure might choose to run compile as 'compile cc -o foo foo.c'. |
|
274 |
+ # So we strip '-o arg' only if arg is an object. |
|
71 | 275 |
eat=1 |
72 | 276 |
case $2 in |
73 | 277 |
*.o | *.obj) |
... | ... |
@@ -94,22 +298,22 @@ do |
94 | 298 |
done |
95 | 299 |
|
96 | 300 |
if test -z "$ofile" || test -z "$cfile"; then |
97 |
- # If no `-o' option was seen then we might have been invoked from a |
|
301 |
+ # If no '-o' option was seen then we might have been invoked from a |
|
98 | 302 |
# pattern rule where we don't need one. That is ok -- this is a |
99 | 303 |
# normal compilation that the losing compiler can handle. If no |
100 |
- # `.c' file was seen then we are probably linking. That is also |
|
304 |
+ # '.c' file was seen then we are probably linking. That is also |
|
101 | 305 |
# ok. |
102 | 306 |
exec "$@" |
103 | 307 |
fi |
104 | 308 |
|
105 | 309 |
# Name of file we expect compiler to create. |
106 |
-cofile=`echo "$cfile" | sed -e 's|^.*/||' -e 's/\.c$/.o/'` |
|
310 |
+cofile=`echo "$cfile" | sed 's|^.*[\\/]||; s|^[a-zA-Z]:||; s/\.c$/.o/'` |
|
107 | 311 |
|
108 | 312 |
# Create the lock directory. |
109 |
-# Note: use `[/.-]' here to ensure that we don't use the same name |
|
313 |
+# Note: use '[/\\:.-]' here to ensure that we don't use the same name |
|
110 | 314 |
# that we are using for the .o file. Also, base the name on the expected |
111 | 315 |
# object file name, since that is what matters with a parallel build. |
112 |
-lockdir=`echo "$cofile" | sed -e 's|[/.-]|_|g'`.d |
|
316 |
+lockdir=`echo "$cofile" | sed -e 's|[/\\:.-]|_|g'`.d |
|
113 | 317 |
while true; do |
114 | 318 |
if mkdir "$lockdir" >/dev/null 2>&1; then |
115 | 319 |
break |
... | ... |
@@ -124,9 +328,9 @@ trap "rmdir '$lockdir'; exit 1" 1 2 15 |
124 | 328 |
ret=$? |
125 | 329 |
|
126 | 330 |
if test -f "$cofile"; then |
127 |
- mv "$cofile" "$ofile" |
|
331 |
+ test "$cofile" = "$ofile" || mv "$cofile" "$ofile" |
|
128 | 332 |
elif test -f "${cofile}bj"; then |
129 |
- mv "${cofile}bj" "$ofile" |
|
333 |
+ test "${cofile}bj" = "$ofile" || mv "${cofile}bj" "$ofile" |
|
130 | 334 |
fi |
131 | 335 |
|
132 | 336 |
rmdir "$lockdir" |
... | ... |
@@ -138,5 +342,6 @@ exit $ret |
138 | 342 |
# eval: (add-hook 'write-file-hooks 'time-stamp) |
139 | 343 |
# time-stamp-start: "scriptversion=" |
140 | 344 |
# time-stamp-format: "%:y-%02m-%02d.%02H" |
141 |
-# time-stamp-end: "$" |
|
345 |
+# time-stamp-time-zone: "UTC" |
|
346 |
+# time-stamp-end: "; # UTC" |
|
142 | 347 |
# End: |
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@102487 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -1,9 +1,9 @@ |
1 | 1 |
#! /bin/sh |
2 |
-# Wrapper for compilers which do not understand '-c -o'. |
|
2 |
+# Wrapper for compilers which do not understand `-c -o'. |
|
3 | 3 |
|
4 |
-scriptversion=2012-10-14.11; # UTC |
|
4 |
+scriptversion=2005-05-14.22 |
|
5 | 5 |
|
6 |
-# Copyright (C) 1999-2013 Free Software Foundation, Inc. |
|
6 |
+# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc. |
|
7 | 7 |
# Written by Tom Tromey <tromey@cygnus.com>. |
8 | 8 |
# |
9 | 9 |
# This program is free software; you can redistribute it and/or modify |
... | ... |
@@ -17,7 +17,8 @@ scriptversion=2012-10-14.11; # UTC |
17 | 17 |
# GNU General Public License for more details. |
18 | 18 |
# |
19 | 19 |
# You should have received a copy of the GNU General Public License |
20 |
-# along with this program. If not, see <http://www.gnu.org/licenses/>. |
|
20 |
+# along with this program; if not, write to the Free Software |
|
21 |
+# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. |
|
21 | 22 |
|
22 | 23 |
# As a special exception to the GNU General Public License, if you |
23 | 24 |
# distribute this file as part of a program that contains a |
... | ... |
@@ -28,224 +29,21 @@ scriptversion=2012-10-14.11; # UTC |
28 | 29 |
# bugs to <bug-automake@gnu.org> or send patches to |
29 | 30 |
# <automake-patches@gnu.org>. |
30 | 31 |
|
31 |
-nl=' |
|
32 |
-' |
|
33 |
- |
|
34 |
-# We need space, tab and new line, in precisely that order. Quoting is |
|
35 |
-# there to prevent tools from complaining about whitespace usage. |
|
36 |
-IFS=" "" $nl" |
|
37 |
- |
|
38 |
-file_conv= |
|
39 |
- |
|
40 |
-# func_file_conv build_file lazy |
|
41 |
-# Convert a $build file to $host form and store it in $file |
|
42 |
-# Currently only supports Windows hosts. If the determined conversion |
|
43 |
-# type is listed in (the comma separated) LAZY, no conversion will |
|
44 |
-# take place. |
|
45 |
-func_file_conv () |
|
46 |
-{ |
|
47 |
- file=$1 |
|
48 |
- case $file in |
|
49 |
- / | /[!/]*) # absolute file, and not a UNC file |
|
50 |
- if test -z "$file_conv"; then |
|
51 |
- # lazily determine how to convert abs files |
|
52 |
- case `uname -s` in |
|
53 |
- MINGW*) |
|
54 |
- file_conv=mingw |
|
55 |
- ;; |
|
56 |
- CYGWIN*) |
|
57 |
- file_conv=cygwin |
|
58 |
- ;; |
|
59 |
- *) |
|
60 |
- file_conv=wine |
|
61 |
- ;; |
|
62 |
- esac |
|
63 |
- fi |
|
64 |
- case $file_conv/,$2, in |
|
65 |
- *,$file_conv,*) |
|
66 |
- ;; |
|
67 |
- mingw/*) |
|
68 |
- file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'` |
|
69 |
- ;; |
|
70 |
- cygwin/*) |
|
71 |
- file=`cygpath -m "$file" || echo "$file"` |
|
72 |
- ;; |
|
73 |
- wine/*) |
|
74 |
- file=`winepath -w "$file" || echo "$file"` |
|
75 |
- ;; |
|
76 |
- esac |
|
77 |
- ;; |
|
78 |
- esac |
|
79 |
-} |
|
80 |
- |
|
81 |
-# func_cl_dashL linkdir |
|
82 |
-# Make cl look for libraries in LINKDIR |
|
83 |
-func_cl_dashL () |
|
84 |
-{ |
|
85 |
- func_file_conv "$1" |
|
86 |
- if test -z "$lib_path"; then |
|
87 |
- lib_path=$file |
|
88 |
- else |
|
89 |
- lib_path="$lib_path;$file" |
|
90 |
- fi |
|
91 |
- linker_opts="$linker_opts -LIBPATH:$file" |
|
92 |
-} |
|
93 |
- |
|
94 |
-# func_cl_dashl library |
|
95 |
-# Do a library search-path lookup for cl |
|
96 |
-func_cl_dashl () |
|
97 |
-{ |
|
98 |
- lib=$1 |
|
99 |
- found=no |
|
100 |
- save_IFS=$IFS |
|
101 |
- IFS=';' |
|
102 |
- for dir in $lib_path $LIB |
|
103 |
- do |
|
104 |
- IFS=$save_IFS |
|
105 |
- if $shared && test -f "$dir/$lib.dll.lib"; then |
|
106 |
- found=yes |
|
107 |
- lib=$dir/$lib.dll.lib |
|
108 |
- break |
|
109 |
- fi |
|
110 |
- if test -f "$dir/$lib.lib"; then |
|
111 |
- found=yes |
|
112 |
- lib=$dir/$lib.lib |
|
113 |
- break |
|
114 |
- fi |
|
115 |
- if test -f "$dir/lib$lib.a"; then |
|
116 |
- found=yes |
|
117 |
- lib=$dir/lib$lib.a |
|
118 |
- break |
|
119 |
- fi |
|
120 |
- done |
|
121 |
- IFS=$save_IFS |
|
122 |
- |
|
123 |
- if test "$found" != yes; then |
|
124 |
- lib=$lib.lib |
|
125 |
- fi |
|
126 |
-} |
|
127 |
- |
|
128 |
-# func_cl_wrapper cl arg... |
|
129 |
-# Adjust compile command to suit cl |
|
130 |
-func_cl_wrapper () |
|
131 |
-{ |
|
132 |
- # Assume a capable shell |
|
133 |
- lib_path= |
|
134 |
- shared=: |
|
135 |
- linker_opts= |
|
136 |
- for arg |
|
137 |
- do |
|
138 |
- if test -n "$eat"; then |
|
139 |
- eat= |
|
140 |
- else |
|
141 |
- case $1 in |
|
142 |
- -o) |
|
143 |
- # configure might choose to run compile as 'compile cc -o foo foo.c'. |
|
144 |
- eat=1 |
|
145 |
- case $2 in |
|
146 |
- *.o | *.[oO][bB][jJ]) |
|
147 |
- func_file_conv "$2" |
|
148 |
- set x "$@" -Fo"$file" |
|
149 |
- shift |
|
150 |
- ;; |
|
151 |
- *) |
|
152 |
- func_file_conv "$2" |
|
153 |
- set x "$@" -Fe"$file" |
|
154 |
- shift |
|
155 |
- ;; |
|
156 |
- esac |
|
157 |
- ;; |
|
158 |
- -I) |
|
159 |
- eat=1 |
|
160 |
- func_file_conv "$2" mingw |
|
161 |
- set x "$@" -I"$file" |
|
162 |
- shift |
|
163 |
- ;; |
|
164 |
- -I*) |
|
165 |
- func_file_conv "${1#-I}" mingw |
|
166 |
- set x "$@" -I"$file" |
|
167 |
- shift |
|
168 |
- ;; |
|
169 |
- -l) |
|
170 |
- eat=1 |
|
171 |
- func_cl_dashl "$2" |
|
172 |
- set x "$@" "$lib" |
|
173 |
- shift |
|
174 |
- ;; |
|
175 |
- -l*) |
|
176 |
- func_cl_dashl "${1#-l}" |
|
177 |
- set x "$@" "$lib" |
|
178 |
- shift |
|
179 |
- ;; |
|
180 |
- -L) |
|
181 |
- eat=1 |
|
182 |
- func_cl_dashL "$2" |
|
183 |
- ;; |
|
184 |
- -L*) |
|
185 |
- func_cl_dashL "${1#-L}" |
|
186 |
- ;; |
|
187 |
- -static) |
|
188 |
- shared=false |
|
189 |
- ;; |
|
190 |
- -Wl,*) |
|
191 |
- arg=${1#-Wl,} |
|
192 |
- save_ifs="$IFS"; IFS=',' |
|
193 |
- for flag in $arg; do |
|
194 |
- IFS="$save_ifs" |
|
195 |
- linker_opts="$linker_opts $flag" |
|
196 |
- done |
|
197 |
- IFS="$save_ifs" |
|
198 |
- ;; |
|
199 |
- -Xlinker) |
|
200 |
- eat=1 |
|
201 |
- linker_opts="$linker_opts $2" |
|
202 |
- ;; |
|
203 |
- -*) |
|
204 |
- set x "$@" "$1" |
|
205 |
- shift |
|
206 |
- ;; |
|
207 |
- *.cc | *.CC | *.cxx | *.CXX | *.[cC]++) |
|
208 |
- func_file_conv "$1" |
|
209 |
- set x "$@" -Tp"$file" |
|
210 |
- shift |
|
211 |
- ;; |
|
212 |
- *.c | *.cpp | *.CPP | *.lib | *.LIB | *.Lib | *.OBJ | *.obj | *.[oO]) |
|
213 |
- func_file_conv "$1" mingw |
|
214 |
- set x "$@" "$file" |
|
215 |
- shift |
|
216 |
- ;; |
|
217 |
- *) |
|
218 |
- set x "$@" "$1" |
|
219 |
- shift |
|
220 |
- ;; |
|
221 |
- esac |
|
222 |
- fi |
|
223 |
- shift |
|
224 |
- done |
|
225 |
- if test -n "$linker_opts"; then |
|
226 |
- linker_opts="-link$linker_opts" |
|
227 |
- fi |
|
228 |
- exec "$@" $linker_opts |
|
229 |
- exit 1 |
|
230 |
-} |
|
231 |
- |
|
232 |
-eat= |
|
233 |
- |
|
234 | 32 |
case $1 in |
235 | 33 |
'') |
236 |
- echo "$0: No command. Try '$0 --help' for more information." 1>&2 |
|
34 |
+ echo "$0: No command. Try \`$0 --help' for more information." 1>&2 |
|
237 | 35 |
exit 1; |
238 | 36 |
;; |
239 | 37 |
-h | --h*) |
240 | 38 |
cat <<\EOF |
241 | 39 |
Usage: compile [--help] [--version] PROGRAM [ARGS] |
242 | 40 |
|
243 |
-Wrapper for compilers which do not understand '-c -o'. |
|
244 |
-Remove '-o dest.o' from ARGS, run PROGRAM with the remaining |
|
41 |
+Wrapper for compilers which do not understand `-c -o'. |
|
42 |
+Remove `-o dest.o' from ARGS, run PROGRAM with the remaining |
|
245 | 43 |
arguments, and rename the output as expected. |
246 | 44 |
|
247 | 45 |
If you are trying to build a whole package this is not the |
248 |
-right script to run: please start by reading the file 'INSTALL'. |
|
46 |
+right script to run: please start by reading the file `INSTALL'. |
|
249 | 47 |
|
250 | 48 |
Report bugs to <bug-automake@gnu.org>. |
251 | 49 |
EOF |
... | ... |
@@ -255,13 +53,11 @@ EOF |
255 | 53 |
echo "compile $scriptversion" |
256 | 54 |
exit $? |
257 | 55 |
;; |
258 |
- cl | *[/\\]cl | cl.exe | *[/\\]cl.exe ) |
|
259 |
- func_cl_wrapper "$@" # Doesn't return... |
|
260 |
- ;; |
|
261 | 56 |
esac |
262 | 57 |
|
263 | 58 |
ofile= |
264 | 59 |
cfile= |
60 |
+eat= |
|
265 | 61 |
|
266 | 62 |
for arg |
267 | 63 |
do |
... | ... |
@@ -270,8 +66,8 @@ do |
270 | 66 |
else |
271 | 67 |
case $1 in |
272 | 68 |
-o) |
273 |
- # configure might choose to run compile as 'compile cc -o foo foo.c'. |
|
274 |
- # So we strip '-o arg' only if arg is an object. |
|
69 |
+ # configure might choose to run compile as `compile cc -o foo foo.c'. |
|
70 |
+ # So we strip `-o arg' only if arg is an object. |
|
275 | 71 |
eat=1 |
276 | 72 |
case $2 in |
277 | 73 |
*.o | *.obj) |
... | ... |
@@ -298,22 +94,22 @@ do |
298 | 94 |
done |
299 | 95 |
|
300 | 96 |
if test -z "$ofile" || test -z "$cfile"; then |
301 |
- # If no '-o' option was seen then we might have been invoked from a |
|
97 |
+ # If no `-o' option was seen then we might have been invoked from a |
|
302 | 98 |
# pattern rule where we don't need one. That is ok -- this is a |
303 | 99 |
# normal compilation that the losing compiler can handle. If no |
304 |
- # '.c' file was seen then we are probably linking. That is also |
|
100 |
+ # `.c' file was seen then we are probably linking. That is also |
|
305 | 101 |
# ok. |
306 | 102 |
exec "$@" |
307 | 103 |
fi |
308 | 104 |
|
309 | 105 |
# Name of file we expect compiler to create. |
310 |
-cofile=`echo "$cfile" | sed 's|^.*[\\/]||; s|^[a-zA-Z]:||; s/\.c$/.o/'` |
|
106 |
+cofile=`echo "$cfile" | sed -e 's|^.*/||' -e 's/\.c$/.o/'` |
|
311 | 107 |
|
312 | 108 |
# Create the lock directory. |
313 |
-# Note: use '[/\\:.-]' here to ensure that we don't use the same name |
|
109 |
+# Note: use `[/.-]' here to ensure that we don't use the same name |
|
314 | 110 |
# that we are using for the .o file. Also, base the name on the expected |
315 | 111 |
# object file name, since that is what matters with a parallel build. |
316 |
-lockdir=`echo "$cofile" | sed -e 's|[/\\:.-]|_|g'`.d |
|
112 |
+lockdir=`echo "$cofile" | sed -e 's|[/.-]|_|g'`.d |
|
317 | 113 |
while true; do |
318 | 114 |
if mkdir "$lockdir" >/dev/null 2>&1; then |
319 | 115 |
break |
... | ... |
@@ -328,9 +124,9 @@ trap "rmdir '$lockdir'; exit 1" 1 2 15 |
328 | 124 |
ret=$? |
329 | 125 |
|
330 | 126 |
if test -f "$cofile"; then |
331 |
- test "$cofile" = "$ofile" || mv "$cofile" "$ofile" |
|
127 |
+ mv "$cofile" "$ofile" |
|
332 | 128 |
elif test -f "${cofile}bj"; then |
333 |
- test "${cofile}bj" = "$ofile" || mv "${cofile}bj" "$ofile" |
|
129 |
+ mv "${cofile}bj" "$ofile" |
|
334 | 130 |
fi |
335 | 131 |
|
336 | 132 |
rmdir "$lockdir" |
... | ... |
@@ -342,6 +138,5 @@ exit $ret |
342 | 138 |
# eval: (add-hook 'write-file-hooks 'time-stamp) |
343 | 139 |
# time-stamp-start: "scriptversion=" |
344 | 140 |
# time-stamp-format: "%:y-%02m-%02d.%02H" |
345 |
-# time-stamp-time-zone: "UTC" |
|
346 |
-# time-stamp-end: "; # UTC" |
|
141 |
+# time-stamp-end: "$" |
|
347 | 142 |
# End: |
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@102485 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -3,7 +3,7 @@ |
3 | 3 |
|
4 | 4 |
scriptversion=2012-10-14.11; # UTC |
5 | 5 |
|
6 |
-# Copyright (C) 1999-2014 Free Software Foundation, Inc. |
|
6 |
+# Copyright (C) 1999-2013 Free Software Foundation, Inc. |
|
7 | 7 |
# Written by Tom Tromey <tromey@cygnus.com>. |
8 | 8 |
# |
9 | 9 |
# This program is free software; you can redistribute it and/or modify |
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gmapR@101176 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -1,9 +1,9 @@ |
1 | 1 |
#! /bin/sh |
2 |
-# Wrapper for compilers which do not understand `-c -o'. |
|
2 |
+# Wrapper for compilers which do not understand '-c -o'. |
|
3 | 3 |
|
4 |
-scriptversion=2005-05-14.22 |
|
4 |
+scriptversion=2012-10-14.11; # UTC |
|
5 | 5 |
|
6 |
-# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc. |
|
6 |
+# Copyright (C) 1999-2014 Free Software Foundation, Inc. |
|
7 | 7 |
# Written by Tom Tromey <tromey@cygnus.com>. |
8 | 8 |
# |
9 | 9 |
# This program is free software; you can redistribute it and/or modify |
... | ... |
@@ -17,8 +17,7 @@ scriptversion=2005-05-14.22 |
17 | 17 |
# GNU General Public License for more details. |
18 | 18 |
# |
19 | 19 |
# You should have received a copy of the GNU General Public License |
20 |
-# along with this program; if not, write to the Free Software |
|
21 |
-# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. |
|
20 |
+# along with this program. If not, see <http://www.gnu.org/licenses/>. |
|
22 | 21 |
|
23 | 22 |
# As a special exception to the GNU General Public License, if you |
24 | 23 |
# distribute this file as part of a program that contains a |
... | ... |
@@ -29,21 +28,224 @@ scriptversion=2005-05-14.22 |
29 | 28 |
# bugs to <bug-automake@gnu.org> or send patches to |
30 | 29 |
# <automake-patches@gnu.org>. |
31 | 30 |
|
31 |
+nl=' |
|
32 |
+' |
|
33 |
+ |
|
34 |
+# We need space, tab and new line, in precisely that order. Quoting is |
|
35 |
+# there to prevent tools from complaining about whitespace usage. |
|
36 |
+IFS=" "" $nl" |
|
37 |
+ |
|
38 |
+file_conv= |
|
39 |
+ |
|
40 |
+# func_file_conv build_file lazy |
|
41 |
+# Convert a $build file to $host form and store it in $file |
|
42 |
+# Currently only supports Windows hosts. If the determined conversion |
|
43 |
+# type is listed in (the comma separated) LAZY, no conversion will |
|
44 |
+# take place. |
|
45 |
+func_file_conv () |
|
46 |
+{ |
|
47 |
+ file=$1 |
|
48 |
+ case $file in |
|
49 |
+ / | /[!/]*) # absolute file, and not a UNC file |
|
50 |
+ if test -z "$file_conv"; then |
|
51 |
+ # lazily determine how to convert abs files |
|
52 |
+ case `uname -s` in |
|
53 |
+ MINGW*) |
|
54 |
+ file_conv=mingw |
|
55 |
+ ;; |
|
56 |
+ CYGWIN*) |
|
57 |
+ file_conv=cygwin |
|
58 |
+ ;; |
|
59 |
+ *) |
|
60 |
+ file_conv=wine |
|
61 |
+ ;; |
|
62 |
+ esac |
|
63 |
+ fi |
|
64 |
+ case $file_conv/,$2, in |
|
65 |
+ *,$file_conv,*) |
|
66 |
+ ;; |
|
67 |
+ mingw/*) |
|
68 |
+ file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'` |
|
69 |
+ ;; |
|
70 |
+ cygwin/*) |
|
71 |
+ file=`cygpath -m "$file" || echo "$file"` |
|
72 |
+ ;; |
|
73 |
+ wine/*) |
|
74 |
+ file=`winepath -w "$file" || echo "$file"` |
|
75 |
+ ;; |
|
76 |
+ esac |
|
77 |
+ ;; |
|
78 |
+ esac |
|
79 |
+} |
|
80 |
+ |
|
81 |
+# func_cl_dashL linkdir |
|
82 |
+# Make cl look for libraries in LINKDIR |
|
83 |
+func_cl_dashL () |
|
84 |
+{ |
|
85 |
+ func_file_conv "$1" |
|
86 |
+ if test -z "$lib_path"; then |
|
87 |
+ lib_path=$file |
|
88 |
+ else |
|
89 |
+ lib_path="$lib_path;$file" |
|
90 |
+ fi |
|
91 |
+ linker_opts="$linker_opts -LIBPATH:$file" |
|
92 |
+} |
|
93 |
+ |
|
94 |
+# func_cl_dashl library |
|
95 |
+# Do a library search-path lookup for cl |
|
96 |
+func_cl_dashl () |
|
97 |
+{ |
|
98 |
+ lib=$1 |
|
99 |
+ found=no |
|
100 |
+ save_IFS=$IFS |
|
101 |
+ IFS=';' |
|
102 |
+ for dir in $lib_path $LIB |
|
103 |
+ do |
|
104 |
+ IFS=$save_IFS |
|
105 |
+ if $shared && test -f "$dir/$lib.dll.lib"; then |
|
106 |
+ found=yes |
|
107 |
+ lib=$dir/$lib.dll.lib |
|
108 |
+ break |
|
109 |
+ fi |
|
110 |
+ if test -f "$dir/$lib.lib"; then |
|
111 |
+ found=yes |
|
112 |
+ lib=$dir/$lib.lib |
|
113 |
+ break |
|
114 |
+ fi |
|
115 |
+ if test -f "$dir/lib$lib.a"; then |
|
116 |
+ found=yes |
|
117 |
+ lib=$dir/lib$lib.a |
|
118 |
+ break |
|
119 |
+ fi |
|
120 |
+ done |
|
121 |
+ IFS=$save_IFS |
|
122 |
+ |
|
123 |
+ if test "$found" != yes; then |
|
124 |
+ lib=$lib.lib |
|
125 |
+ fi |
|
126 |
+} |
|
127 |
+ |
|
128 |
+# func_cl_wrapper cl arg... |
|
129 |
+# Adjust compile command to suit cl |
|
130 |
+func_cl_wrapper () |
|
131 |
+{ |
|
132 |
+ # Assume a capable shell |
|
133 |
+ lib_path= |
|
134 |
+ shared=: |
|
135 |
+ linker_opts= |
|
136 |
+ for arg |
|
137 |
+ do |
|
138 |
+ if test -n "$eat"; then |
|
139 |
+ eat= |
|
140 |
+ else |
|
141 |
+ case $1 in |
|
142 |
+ -o) |
|
143 |
+ # configure might choose to run compile as 'compile cc -o foo foo.c'. |
|
144 |
+ eat=1 |
|
145 |
+ case $2 in |
|
146 |
+ *.o | *.[oO][bB][jJ]) |
|
147 |
+ func_file_conv "$2" |
|
148 |
+ set x "$@" -Fo"$file" |
|
149 |
+ shift |
|
150 |
+ ;; |
|
151 |
+ *) |
|
152 |
+ func_file_conv "$2" |
|
153 |
+ set x "$@" -Fe"$file" |
|
154 |
+ shift |
|
155 |
+ ;; |
|
156 |
+ esac |
|
157 |
+ ;; |
|
158 |
+ -I) |
|
159 |
+ eat=1 |
|
160 |
+ func_file_conv "$2" mingw |
|
161 |
+ set x "$@" -I"$file" |
|
162 |
+ shift |
|
163 |
+ ;; |
|
164 |
+ -I*) |
|
165 |
+ func_file_conv "${1#-I}" mingw |
|
166 |
+ set x "$@" -I"$file" |
|
167 |
+ shift |
|
168 |
+ ;; |
|
169 |
+ -l) |
|
170 |
+ eat=1 |
|
171 |
+ func_cl_dashl "$2" |
|
172 |
+ set x "$@" "$lib" |
|
173 |
+ shift |
|
174 |
+ ;; |
|
175 |
+ -l*) |
|
176 |
+ func_cl_dashl "${1#-l}" |
|
177 |
+ set x "$@" "$lib" |
|
178 |
+ shift |
|
179 |
+ ;; |
|
180 |
+ -L) |
|
181 |
+ eat=1 |
|
182 |
+ func_cl_dashL "$2" |
|
183 |
+ ;; |
|
184 |
+ -L*) |
|
185 |
+ func_cl_dashL "${1#-L}" |
|
186 |
+ ;; |
|
187 |
+ -static) |
|
188 |
+ shared=false |
|
189 |
+ ;; |
|
190 |
+ -Wl,*) |
|
191 |
+ arg=${1#-Wl,} |
|
192 |
+ save_ifs="$IFS"; IFS=',' |
|
193 |
+ for flag in $arg; do |
|
194 |
+ IFS="$save_ifs" |
|
195 |
+ linker_opts="$linker_opts $flag" |
|
196 |
+ done |
|
197 |
+ IFS="$save_ifs" |
|
198 |
+ ;; |
|
199 |
+ -Xlinker) |
|
200 |
+ eat=1 |
|
201 |
+ linker_opts="$linker_opts $2" |
|
202 |
+ ;; |
|
203 |
+ -*) |
|
204 |
+ set x "$@" "$1" |
|
205 |
+ shift |
|
206 |
+ ;; |
|
207 |
+ *.cc | *.CC | *.cxx | *.CXX | *.[cC]++) |
|
208 |
+ func_file_conv "$1" |
|
209 |
+ set x "$@" -Tp"$file" |
|
210 |
+ shift |
|
211 |
+ ;; |
|
212 |
+ *.c | *.cpp | *.CPP | *.lib | *.LIB | *.Lib | *.OBJ | *.obj | *.[oO]) |
|
213 |
+ func_file_conv "$1" mingw |
|
214 |
+ set x "$@" "$file" |
|
215 |
+ shift |
|
216 |
+ ;; |
|
217 |
+ *) |
|
218 |
+ set x "$@" "$1" |
|
219 |
+ shift |
|
220 |
+ ;; |
|
221 |
+ esac |
|
222 |
+ fi |
|
223 |
+ shift |
|
224 |
+ done |
|
225 |
+ if test -n "$linker_opts"; then |
|
226 |
+ linker_opts="-link$linker_opts" |
|
227 |
+ fi |
|
228 |
+ exec "$@" $linker_opts |
|
229 |
+ exit 1 |
|
230 |
+} |
|
231 |
+ |
|
232 |
+eat= |
|
233 |
+ |
|
32 | 234 |
case $1 in |
33 | 235 |
'') |
34 |
- echo "$0: No command. Try \`$0 --help' for more information." 1>&2 |
|
236 |
+ echo "$0: No command. Try '$0 --help' for more information." 1>&2 |
|
35 | 237 |
exit 1; |
36 | 238 |
;; |
37 | 239 |
-h | --h*) |
38 | 240 |
cat <<\EOF |
39 | 241 |
Usage: compile [--help] [- |