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View 6cc263e
seems to work now. Something weird going on, needs -O0 when building gstructGabriel Becker authored on 14/08/2014 19:13:43 |
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View b0aa06a
fix checkin of codontally codeGabriel Becker authored on 13/08/2014 21:49:41 |
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View c78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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View d71517d
once again, disable maintainer mode for gstructMichael Lawrence authored on 03/07/2014 23:40:24 |
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View 52b3ca6
update gstruct (hopefully fix build)Michael Lawrence authored on 06/06/2014 22:10:15 |
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View 2a4fd1e
update ignoresMichael Lawrence authored on 04/06/2014 23:34:39 |
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View f5e63d3
update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.Michael Lawrence authored on 13/05/2014 02:04:05 |
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View 9f0e3a7
bam_tally has reworked memory management to avoid memory "leaks" that seem to happen on our clusterMichael Lawrence authored on 05/05/2014 21:02:45 |
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View 96cf993
re-add counting of unique read positions (convenient when dupes are not marked) and fix an uninitialized value (param.cycle_breaks) detected by valgrindMichael Lawrence authored on 02/05/2014 12:51:58 |
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View 6d5d75f
add support for the noncovered argument; tells bam_tally to report even those positions that have no coverageMichael Lawrence authored on 30/04/2014 17:05:27 |
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View 144f6bb
update bam_tally, mostly to fix memory leaks but we are also moving towards a decent indel realignerMichael Lawrence authored on 30/04/2014 17:04:17 |
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View 30f3bfd
drop the unique read position counts; renamed count.pos/count.neg to count.plus/count.minus (way better names)Michael Lawrence authored on 04/04/2014 13:36:22 |
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View 0113a37
remove old config scriptMichael Lawrence authored on 04/04/2014 13:35:07 |
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View ae7cf39
bring back the unique read position count, and mean/variance of read positionsMichael Lawrence authored on 04/04/2014 13:16:32 |
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View 1beff33
fix disable-maintainer-modeMichael Lawrence authored on 02/04/2014 22:35:46 |