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View 5659f09
add raw total count statistic to tallies (everything else now qual filtered)Michael Lawrence authored on 24/11/2015 22:19:59 |
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View ead94b3
add ability to call GMAPMichael Lawrence authored on 23/11/2015 23:25:34 |
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View b8e2b22
let users pass a 'param' when building a GmapGenome from a FaFileMichael Lawrence authored on 20/11/2015 12:24:09 |
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View 2332d26
add untested support for FaFile=>GmapGenomeMichael Lawrence authored on 19/11/2015 18:51:30 |
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View 38518dd
fixes for bam_tally updateMichael Lawrence authored on 13/11/2015 22:40:27 |
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View 685d60e
work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level countsMichael Lawrence authored on 13/11/2015 21:50:11 |
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View f18ff85
more robust check for empty read pos breaksMichael Lawrence authored on 02/11/2015 22:42:05 |
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View bfeb9ea
fix forwarding args to TallyIITMichael Lawrence authored on 02/11/2015 21:40:00 |
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View 8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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View 093e455
labeledLine() was moved from BiocGenerics to S4VectorsHerve Pages authored on 07/08/2015 23:37:20 |
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View d5ed124
Reverted to r101133, along with NAMESPACE fixesMichael Lawrence authored on 14/04/2015 21:40:44 |
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View c8fd96e
Recent work towards supporting the new features... will revert back to a stable version immediately...Michael Lawrence authored on 14/04/2015 21:32:10 |
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View e26b36b
no need to declare POSIXlt classMichael Lawrence authored on 12/04/2015 04:17:43 |
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View 53f6387
getSeq,GmapGenome now checks that seqinfo(x) and seqinfo(which) are compatibleMichael Lawrence authored on 12/02/2015 21:44:32 |
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View 60982df
some internal cleanup in BamTallyParamMichael Lawrence authored on 13/10/2014 18:07:30 |