December 3, 2015
Viewf053c5f

general cleanup and fixes, doc updates

Michael Lawrence authored on 03/12/2015 21:11:09
August 11, 2014
Viewc78be69

add codon tally support. No vbump yet

Gabriel Becker authored on 11/08/2014 23:42:48
June 4, 2014
Viewe72c091

attempt to fix unit tests for the Mac (OS X Mavericks)

Michael Lawrence authored on 04/06/2014 23:33:32
April 11, 2013
View0a2be6d

Use %over% instead of %in% (now defunct) between a GRangesList and a GRanges object.

Herve Pages authored on 11/04/2013 16:40:41
March 26, 2013
View5db28c4

Add getSeq,GmapGenome method

Michael Lawrence authored on 26/03/2013 21:44:17
March 9, 2013
View1a08f35

force all tests to build 12mer indices to save memory (and thus hopefully build on the Hutch build machines)

Michael Lawrence authored on 09/03/2013 01:04:14
November 22, 2012
Viewcf7cde5

*added test to GmapGenome construct when directory is passed that doesn't exist

Cory Barr authored on 22/11/2012 00:43:04
September 28, 2012
View3190b2e

refer to txTP53 in unit test instead of undeclared tx

Dan Tenenbaum authored on 28/09/2012 01:23:00
September 26, 2012
View2ed0e62

added test for spliceSites<- method

Cory Barr authored on 26/09/2012 21:22:34
September 12, 2012
View15766c6

*drop passing of ... arg to method snps<- eventually dispatches on

Cory Barr authored on 12/09/2012 22:29:42
Viewc6574d2

tests updated since if DNAStringSet obj is now used to create a GmapGenome, DNAStringSet obj needs names() set

Cory Barr authored on 12/09/2012 18:11:41
Viewfa2ff4e

if GmapGenome constructor is called with a DNAStringSet, now requiring that object to have names set (gmap_build does not like empty names). Test added

Cory Barr authored on 12/09/2012 00:06:17
August 21, 2012
View0a4b811

exporting GmapSnps and GmapSnpDirectory

Cory Barr authored on 21/08/2012 23:52:09
August 2, 2012
Viewb22faf0

renaming gmapR2 to gmapR: it lives again

Michael Lawrence authored on 02/08/2012 22:24:24