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View f053c5f
general cleanup and fixes, doc updatesMichael Lawrence authored on 03/12/2015 21:11:09 |
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View ead94b3
add ability to call GMAPMichael Lawrence authored on 23/11/2015 23:25:34 |
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View 0379507
clip_overlaps should be clip_overlapMichael Lawrence authored on 12/02/2014 17:13:58 |
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View 8e9167b
clip_overlaps added to GsnapParamMichael Lawrence authored on 14/01/2014 19:12:55 |
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View 119984f
actually check in the gmap-mode fixMichael Lawrence authored on 10/09/2013 03:42:15 |
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View 3dd2c1f
fix default (NULL) for gmap-mode argument to gsnapMichael Lawrence authored on 09/09/2013 21:59:47 |
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View 2839838
Support terminal_threshold parameter, and use different defaults for DNA vs. RNA. This means a big improvement in alignment quality for DNA.Michael Lawrence authored on 14/07/2013 00:37:00 |
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View c64187e
Check that genome argument is provided in GsnapParam. No way to get a safe default for this one.Michael Lawrence authored on 09/11/2012 12:54:49 |
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View e2b4bdb
Match up GsnapParams@splicing with new use_splicing gsnap parameterMichael Lawrence authored on 07/09/2012 17:37:14 |
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View a347f0e
Fix novelsplicing coercion so that it specifies the 0/1 flag (Greg's second issue).Michael Lawrence authored on 06/09/2012 23:15:38 |
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View 9facdd9
Rewrite the GsnapParam constructor to coerce its arguments to the slot types.Michael Lawrence authored on 06/09/2012 12:01:42 |
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View e8f9c3a
fixed bug in handling 'errors' slot of GsnapParams objectsCory Barr authored on 22/08/2012 22:25:34 |
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View fb3917e
novel_splicing GSNAP param should default to FALSE (not 0) in GsnapParams()Michael Lawrence authored on 17/08/2012 20:18:15 |
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View b22faf0
renaming gmapR2 to gmapR: it lives againMichael Lawrence authored on 02/08/2012 22:24:24 |