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Viewf053c5f
general cleanup and fixes, doc updatesMichael Lawrence authored on 03/12/2015 21:11:09 |
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View38518dd
fixes for bam_tally updateMichael Lawrence authored on 13/11/2015 22:40:27 |
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View685d60e
work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level countsMichael Lawrence authored on 13/11/2015 21:50:11 |
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View8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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View093e455
labeledLine() was moved from BiocGenerics to S4VectorsHerve Pages authored on 07/08/2015 23:37:20 |
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Viewd5ed124
Reverted to r101133, along with NAMESPACE fixesMichael Lawrence authored on 14/04/2015 21:40:44 |
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Viewc8fd96e
Recent work towards supporting the new features... will revert back to a stable version immediately...Michael Lawrence authored on 14/04/2015 21:32:10 |
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View60982df
some internal cleanup in BamTallyParamMichael Lawrence authored on 13/10/2014 18:07:30 |
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Viewcfb01d1
some fiddling, disable maintainer mode, vbumpGabriel Becker authored on 14/08/2014 20:39:03 |
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Viewc78be69
add codon tally support. No vbump yetGabriel Becker authored on 11/08/2014 23:42:48 |
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Viewf5e63d3
update to new bam_tally with support for XS counting, which we now support via BamTallyParam@count_xs.Michael Lawrence authored on 13/05/2014 02:04:05 |
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View6d5d75f
add support for the noncovered argument; tells bam_tally to report even those positions that have no coverageMichael Lawrence authored on 30/04/2014 17:05:27 |
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View17db5e7
update GSTRUCT (bam_tally); add include_soft_clip parameter for counting over soft clips of a given max length (more accurate allele frequency)Michael Lawrence authored on 02/04/2014 22:03:40 |
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View1867ab0
labeledLine moved to BiocGenericsMichael Lawrence authored on 14/10/2013 18:51:25 |
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View4d5cc80
update to latest gstruct; brings faster bam_tally (for high coverage regions) and read-group filtering support in bam_tallyMichael Lawrence authored on 20/09/2013 02:05:42 |