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Viewe1b17d3
follow renaming of union classes in S4VectorsHerve Pages authored on 01/02/2017 13:23:02 |
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Viewead94b3
add ability to call GMAPMichael Lawrence authored on 23/11/2015 23:25:34 |
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View8418591
resurrect improvements that we reverted before the April release, expect breakage for a whileMichael Lawrence authored on 28/10/2015 18:51:00 |
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Viewd5ed124
Reverted to r101133, along with NAMESPACE fixesMichael Lawrence authored on 14/04/2015 21:40:44 |
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Viewe26b36b
no need to declare POSIXlt classMichael Lawrence authored on 12/04/2015 04:17:43 |
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View277f5cf
GsnapOutputList now uses the internal list constructor from S4Vectors (instead of IRanges)Michael Lawrence authored on 11/10/2014 20:33:08 |
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View13cf5e5
fix sam paths for asBam()Michael Lawrence authored on 26/02/2014 23:11:47 |
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View03482b7
GsnapOutput supports the new "circular" outputsMichael Lawrence authored on 14/01/2014 19:13:26 |
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Viewebafcdf
gsnap will now output a GsnapOutputList when there are multiple input files; this means that the return value is more dependent on the input than we may like; perhaps we want a FastqFile and FastqFileList to make this more consistent?Michael Lawrence authored on 23/08/2013 14:22:00 |
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Viewf9d3e36
fix asBam,GsnapOutput for when unique_only is TRUEMichael Lawrence authored on 15/07/2013 23:42:47 |
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Viewf7a6608
Fix asBam,GsnapOutput so that it does not strip the nomapping extension. Also, add validity method that fails when the object points to no sam/bam files.Michael Lawrence authored on 29/01/2013 00:48:56 |
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View2e68fea
Further fixes to asBam,GsnapOutputMichael Lawrence authored on 26/01/2013 01:59:44 |
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View5b410c2
Fix is_dir() call in asBam,GsnapOutputMichael Lawrence authored on 25/01/2013 03:36:04 |
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View59a9b77
GsnapOutput fixes: - Resolve relative paths to absolute in constructor - [single file] Do not include 'sam' extension in bam filename - [single file] asBam updates path to point to bam, instead of samMichael Lawrence authored on 09/11/2012 12:54:10 |
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View8600ee5
removed option to turn off BAM compression, does not workCory Barr authored on 19/09/2012 00:18:48 |