January 29, 2016
Viewd92a799

elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon)

Herve Pages authored on 29/01/2016 01:22:03
December 7, 2015
Viewd36ac68

make seqinfo setting robust to missing seqlevels

Michael Lawrence authored on 07/12/2015 03:40:40
December 5, 2015
Viewcb7ab58

fix single output case for GMAP

Michael Lawrence authored on 05/12/2015 15:00:00
December 3, 2015
Viewf053c5f

general cleanup and fixes, doc updates

Michael Lawrence authored on 03/12/2015 21:11:09
November 24, 2015
View5659f09

add raw total count statistic to tallies (everything else now qual filtered)

Michael Lawrence authored on 24/11/2015 22:19:59
November 23, 2015
Viewead94b3

add ability to call GMAP

Michael Lawrence authored on 23/11/2015 23:25:34
November 19, 2015
View2332d26

add untested support for FaFile=>GmapGenome

Michael Lawrence authored on 19/11/2015 18:51:30
November 13, 2015
View685d60e

work towards supporting new bam_tally; drops quality info (now cutoff based), adds xs/nm/del and codon-level counts

Michael Lawrence authored on 13/11/2015 21:50:11
October 28, 2015
View8418591

resurrect improvements that we reverted before the April release, expect breakage for a while

Michael Lawrence authored on 28/10/2015 18:51:00
October 13, 2015
View1f42582

Bumped version number of all packages after creation of 3.2 branch.

Dan Tenenbaum authored on 13/10/2015 19:59:53
Viewe4a80ba

Bumped versions of all packages prior to creating 3.2 branch.

Dan Tenenbaum authored on 13/10/2015 19:36:05
August 7, 2015
View093e455

labeledLine() was moved from BiocGenerics to S4Vectors

Herve Pages authored on 07/08/2015 23:37:20
April 16, 2015
View5be0f7d

Bump versions in trunk after creation of 3.1 branch.

Dan Tenenbaum authored on 16/04/2015 20:02:44
Viewf777bf1

Bump versions prior to creating 3.1 branch.

Dan Tenenbaum authored on 16/04/2015 19:42:01
April 14, 2015
Viewd5ed124

Reverted to r101133, along with NAMESPACE fixes

Michael Lawrence authored on 14/04/2015 21:40:44